Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00345 AAATATTGGAAACCCAGTTTGAGATATTAGGCATTTGGCATGTTAACTTGCCCAATGCAAATTGATGCGTTTCAGTAACGTTGGGCACAGATCTTGTCTCAGTGAGGGTGAGAATGGGAAGTACGAAGAAGCCTTCTCCTCTTTCTCTGCAGCAATTCATCTCTATCACTGCTCCTCTTCTTGACTTGGAAAAGGAATCTGAGATTTCTAGCTCAATCGCTACTGGCGCCTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCCACAATCCTCAACTTGAAGTGCGTCGATGTTCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTTCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGTCCGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTGGTTTACAGATTAAAGGATTCATCAATAACTGTTGCTTTTGATGATATACCAGAAGACGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACTTATCGCAGGATGAAAGATGCATTAATACAATTGAGTAAAGGAGTGCACAGGGGTCCTGCTTCTGATCTGATTCCTACCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATATTTCCTTCACTCCCTTTAATAGTAGTCTTGATCACTCTCAGCAAGAAGCAGTTTCGAAAGCTCTATCGTCGAGGAATGTGTTCTTGCTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCGGCTTCGAATATTGCGGTTGACAACATTGTTGAACGGCTGGTTCCACATAGAGTTAAGCTGGTGAGGCTGGGTCATCCTGCACGTTTATTGCCACAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCGTTGAATGGAAAGCTGTTGAAAACTAAAGACAGAAATACGAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCATCTTGCAGTTACAGATGTACTTAAATGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGACGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGTTGAAGGGCTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGGACACTCTTTGAACGGCTTGCAGAAATGTATGGAGATGAAATCACATCAATGCTTACTGTCCAGTACCGCATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATGCAAGTGTTAGTGCTCATATGTTATATGATCTAGATGCTGTGAAGCAGACATCTTCAACTGAACCAACCCTTCTTCTCATAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGACGAAGAAGATAGCACCTTTAATGAAGGTGAATCTGAGGTTACCATGGCTCATGCAAAAAGACTAATGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCGCAGGTTGTTTTACTCAAGATGTTGAGAAATAAGGAGGACCGGCTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCTAAAAAAGAGGTTGGTTTTCTGAGTGATCGTCGGCGAATGAATGTGGCTGTGACTCGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAATGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAAGAGCATGGTGAATATCTGAGTGCATCTGAGTACCAGAATGAATCCACCTCAACAATTTGCAATTCACGAACTATATTTCACATGTCCTGCTATACACGACCTGATTCTCGAGACTTAGGTGGTCACCTTTATTCCATGCTTGCTCTCTATATGCATGCCATCATGAATTGCCCCAAAATGTCCATATATCACACCGAATGGAAACATGGTCGCGTCAGAGTGAAGATCATG 2234 0.4221 MGSTKKPSPLSLQQFISITAPLLDLEKESEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKSDLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPASDLIPTLFGERPPTVSKKDISFTPFNSSLDHSQQEAVSKALSSRNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQHLAVTDVLKCADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHASVSAHMLYDLDAVKQTSSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGESEVTMAHAKRLMQSGVLPSDIGIITPYAAQVVLLKMLRNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVNGDGFLKRLIEYFEEHGEYLSASEYQNESTSTICNSRTIFHMSCYTRPDSRDLGGHLYSMLALYMHAIMNCPKMSIYHTEWKHGRVRVKIM 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00345 707 CDD DEXXQc_SMUBP2 193 441 - -
Pste5g00345 707 SMART AAA_5 208 460 IPR003593 GO:0016887
Pste5g00345 707 Pfam AAA domain 194 408 IPR041677 GO:0004386
Pste5g00345 707 Gene3D - 38 140 - -
Pste5g00345 707 Pfam AAA domain 417 613 IPR041679 -
Pste5g00345 707 SMART ultradead3 190 441 IPR014001 -
Pste5g00345 707 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 13 644 - -
Pste5g00345 707 Coils Coil 295 315 - -
Pste5g00345 707 NCBIfam IGHMBP2 family helicase 342 637 IPR004483 GO:0003677|GO:0005524
Pste5g00345 707 Gene3D - 440 647 IPR027417 -
Pste5g00345 707 CDD SF1_C_Upf1 442 630 IPR047187 -
Pste5g00345 707 FunFam DNA-binding protein SMUBP-2 38 140 - -
Pste5g00345 707 Gene3D - 21 424 IPR027417 -
Pste5g00345 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 632 IPR027417 -
Pste5g00345 707 FunFam P-loop containing nucleoside triphosphate hydrolase 440 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00345 Pste-Chr5 2348177 2366655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00345 167 377 Core DNA Replication Machinery Family AT1G08840 26.066 4.51e-11 64.7