Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00341 CATCGATGGCGTCTTCACTTGGTCGACGAAGAACCCACGCCCCGAAGTGCGACGTGGAGGATATCTGCTGCGAGGAATGCGGTCTAGGGCACTCCCCTTCGAAGCTCCTTCTCTGCGACAAATGCGATCGTGGCTACCATCTCTTCTGCCTCCGTCCCATCCTCCCTTCCGTCCCCAAATCTCATTGGTTCTGCCCTTCCTGCTCCTCTTCCCTCCTTCCCAAATCTTTCCCCCTTTTCCAGACCAAAATCATCGACTTCTTTCGGATCCAACGTTCCCCCGATGGCTCCTCCGTTCAAGCGACCCGCAGAAAGCGTAAGCGTAGTGTCAGCATGGTGGTGTCCAAGAAGAAGAGGAACCTGTTGCCCTTCGTCCCCACTCTCGATCCCAATCGTCGATTCGCTCAGATGGCTTCCCTCGCTACTGCTTTGACCGCCACCAATACCCACTTCTCCAATTCCCTCACTTACCTCCCTCGAATGGCACCCCGTTCCGCTAATTCCCCTTCTCTCGAGCGCGGTGGAATGCAGGTCTTGTCTAAAGAAAACACCCACACCTTATGCCTTTGCAAATCTATGATGGAAAGAGGACAATGCCCACCTCTCATGGTTGTTTATGATCCTCTAGAAGGCTTCACTGTAGAGGCAGATAGATCCATCAAAGATTTAACCATAATAACAGAATATGTTGGGGATGTAGACTTTTTAAAGAATAGGGAAAATGATGGTGGGGATAGCATGATGACACTTCTCTCAGCTTCTGATCCTTCACAAACACTTGTCATCTGTCCAGACAAGCGTAGCAACATAGCACGTTTCATCAATGGCATCAATAATCATACACCGGAAGGGAAAAAGAAGCAGAACTTAAAATGCGTGAGGTTTAATGTGGGAGGCGAATGCCGTGTTCTTTTAATTGCCAACAGAGATATTATGAAGGGCGAAAGGTTGTACTATGACTACAATGGAGATGAACATGAATATCCAACTGAACATTTTGTCTGATTCTGTTCAAATATTAGCATGTCACCCCAGCACGGAGGTAATTATAAGTTTATTGTAAGCTCGGGTTTTTTCATCTCTAAGTTGATTTGGTCACCGCCTTAAAATGGTTGCCTTGTCAATGCCTCACATGTATCTTGTACACTTGAGTTGGACATGTATCATGCTGGATACATAATATATTTCATCGTATACTTATCTTTTGTATTGTTCAATTATTTTCATGAATTGTTTATTTATTAGATTAGCATATGATTTTATTGTATATGCACTGCCGAATGCAT 1285 0.4521 MASSLGRRRTHAPKCDVEDICCEECGLGHSPSKLLLCDKCDRGYHLFCLRPILPSVPKSHWFCPSCSSSLLPKSFPLFQTKIIDFFRIQRSPDGSSVQATRRKRKRSVSMVVSKKKRNLLPFVPTLDPNRRFAQMASLATALTATNTHFSNSLTYLPRMAPRSANSPSLERGGMQVLSKENTHTLCLCKSMMERGQCPPLMVVYDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDGGDSMMTLLSASDPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFNVGGECRVLLIANRDIMKGERLYYDYNGDEHEYPTEHFV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00341 332 ProSiteProfiles Zinc finger PHD-type profile. 19 69 IPR019787 -
Pste5g00341 332 FunFam Histone-lysine N-methyltransferase ATXR5 103 332 - -
Pste5g00341 332 SUPERFAMILY SET domain 179 323 IPR046341 -
Pste5g00341 332 ProSiteProfiles SET domain profile. 198 320 IPR001214 GO:0005515
Pste5g00341 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
Pste5g00341 332 SMART PHD_3 21 67 IPR001965 -
Pste5g00341 332 Pfam PHD-finger 22 68 IPR019787 -
Pste5g00341 332 CDD PHD_RSF1 22 66 - -
Pste5g00341 332 ProSitePatterns Zinc finger PHD-type signature. 22 66 IPR019786 -
Pste5g00341 332 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 96 330 - -
Pste5g00341 332 CDD SET_ATXR5_6-like 195 332 - -
Pste5g00341 332 Gene3D SET domain 103 332 IPR046341 -
Pste5g00341 332 SUPERFAMILY FYVE/PHD zinc finger 11 73 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00341 Pste-Chr5 2321539 2323379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00341 13 66 C2H2 Transcription Factor Family AT3G01460 42.593 1.36e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste5g00341 PHD 1.8e-09 CL0390