Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00330 AAAAATTGAAAGGAGTCTCCCACTGATACAAAATACTATATGTACTTACCCGTCTCTTCCCTCCCATGAACCACTCCTCTTCCTGCTTCTAACAACAACTAAAATACCTTTTTCCCTTACGCAATTCCTGAATCCCAATCTTCCCTTTTCAAATCAAATCCCAATTCCCCTCTCAAACCCCAAAAAAAGCATTTATCTCTGCACAAAAATCCCACCTTTCTTTCAAATTTGCCCCACCCACCTTCTCGCTTTTTCACTTCAAGATTCAGACGCGCTTTCTTTCCGCTACTCTCTAGTTTTTTCTAAGTGGGTTCCTTCTCCTTTCTCAAATGCTCAACCCTGCCCGGCTCTGATTTCTTCAATTACTTTCAATGCGAACCATTTCGGCTTGACCCAGAAAACCTAGGTCCCTAGGGCTCTTCCAATCTTTCGTTAGTTTTGCTCAAAATTCGATTTTCCCGTTTCTTTTGCAACTGGGTATGGTGGGGAACGACGACCCGTGCCACCTCTCCGCCTCCCGGAAAATGTTCTGGCGGTCCGCGTCCTGGTCCGCCTCGCGCACCGCCGCCGGAAACGCCTCTTCCGGCGAGGCGGATAAGAGTTTCGCCGATTCCGGCGGAGCCAACGGTCCCCATAGTCAGAACCGGAGGTTCCCTCCGCCCCCGCTAACGCCTCGGTCGCAGCAAAATTGCAAGGCGCGGTCGTGCCTGCCGCCGCTGCAGCCGCTCTCCATCGCCCGCCGGAGCCTTGACGAGTGGCCGAAGGCAGGCTCGGACGATATCGGCGAGTGGCCGCAGCCGCCCACGACCCCCGGCGCTAGAGGTAACGGTAGCAATGGTGACAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAACAACCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGAGATAAGATTGCATTTTTTGACAAGGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGACAGAGACATTTTGAAGCATAATAGGATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGTTGCAGGATAGTCCTTCTGAGGACATTACTAGTATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAGCAAGGTGGGCGAGTGTTTGTGCACTGTTGTCAAGGGGTGTCTAGGTCTACCTCTTTGGTTATTGCCTACCTTATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCAGCCAGGGGGATTGCTGATCCAAATATGGGTTTTGCTTGCCAGTTATTGCAGTGCCAGAAGAGGGTCCATGCGGTTCCTCTCAGTCCTAGCTCTTTGCTGAGGATGTATAGGATTGCTCCACACTCTCCGTATGATCCATTGCATCTAGTTCCCAAAATGTTGACAGATCCTTCTTTGGATGCAATGGACTCCAGAGGTGCATTTATCGTGCATATTCCTTCAGCGATATATGTTTGGATTGGTAAGAGTTGTGAGGCCATCATGGAAAGGGATGCCAGAGGGGCTGTTGGTCAGATTGTCCGATATGAGAAGGTGCAAGGACCAATTGTGATGATTAGGGAAGGCGACGAACCAGCTTATTTTTGGGATGCTTTTTCAAATTTTCTGCCCTTGATGGACAAATCTGAAAGTGGAGTAGAAGATGGCATATTAACTACTAAATTTTTGCCTGGCCAGAGAAAAGTGGACGCATACAATGTTGATTTTGAAGTTTTCAAGAAAGCAATCACTGGAGGCTTTGTGCCTCCATTTGCGTCATCGGATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGGTTTAAGGCGTAAAGTTTCCTCTGCTAATATAAAGGAGTTTGTTTCAGCCCCCAGGATATCCTTTCCTAGGGTTTATTCAGACTCCATGTTGTGTATTCATGCATCAGCCAAATTGTCTCCTTCCTCGTCCCTGTCATCATCGTCATCATCGATATCATCATCCTCTTCACCATCTTATGTATCACCAGATTCCATTTCTTCTGATTCTAGCACTCATTCAAAGTTTTTGGCAGAAGGGTTTCCAGATTCTTCCTCTGTGGTTTTGACTCCTATTCCTGTATCTCCATCTTTGTCTAATTTTTCTAATTTGTCAATCTCATCCCATTCTACATCTCAGACAGCGTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACGTCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAAAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCGCTAATGAATGATAAGACACATGTAGTAGATAAATCATCGACTTCTCAGGCTACTCAAGAACATGGCTTTGTTGTTAACGGTAGCGTTAGCTATTTTCAACAATCAGATAGTAAAGATAATTTTTGTGAGTCTAACAACCATGCCAATGATGGAGGTGTGAATTCAATTCAAAAGTGTGAGCTGGCATTGTGCCCAAACATCATTGATAGTATCCACATCAAGGAATCATCACTTGTCAGGAACTCTGTTGAACCTTTGATAGATGGTTCCAAAATAGAAGACTTACTGCTTAGTCAGTCTACAGCTTTGAAGGGAACTAATGAGAGTGGCTTACTGCAGTATAATGTCAGTCAAACCTTGGTATATCACTGGCCCAGTTTGGAAAAGGTTGAGACATTTGGTGCAAGTCATTTGGATTCTAAAGCTGTTTTTGTCATATTCTCTCCCAGTATGCATGTACATACAGGGAACATTTTATATATTTGGGTAGGAAGGTCTTTCAATTGTGAAACTTCACATGCTCACTTACGTATTGATAAACAGACAAATTACCTAGGAGCTGTTGACTGGAATCAAATTGGTTGTGATCTCCTTGCTCGGTTTAGTTTGCCAAAGAACACAGTAACCAAGGAGGTTGTTCCATGCCAAGTCAATTGTAGCTCGGCTGATTGTACAGAGGTTGTGAGAATTGTTGTGGACAATGCTAAAAAGGCTGATCCCAAAGCTCAGGCCTTGAAGGCAGCTAAAGTTGTCAAATCCGGTGGCCAATTGTTTAAGAAGAAAGTAAAAAAAATCCGGACATCAGTTACATTTCACAGGCCAAAGACATTGAAGAAGGAAAGGAACCCTAAGTATCCTCGCATCAGTGCCCCACCAAGAAACAAGTTGGACCATTATCAGATACTTAAATTTCCTTTAACTACCGAATCTGCAATGAAGAAGATTGAGGATAACAACACCCTGGTTTTTGTTGTTGACCTTCGCGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAGATGTATGATATTCAGGCGAAGAAAGTAAATACTCTAATCAGGCCAGATGGAACAAAGAAAGCCTATGTTCGGTTGACTCCAGATTATGATGCCTTAGATATTATGAATTTAAGTTCATTGTTTCATAGAGAAATCAAGCAATCCTTATGTGTAAGGGATTTGGCTGTTTCCAATGCTTGGCATTTTGTAGTTCTTTGTCATAACTGGATGATGCTATCACAACATTCCAAGGAAGTATTGGCTATTCCTTGTTGGGTTACACTGACACGAAAACAATTCATGGCATTTTTTCCCCTTATGAATACCAGCCATAGTCAGAATCTCTTGGAAAGGAGTCCATCGTTGCCCAATAATATGCTTGGTTATTATTTGAGCTATATCTGGACATCACATCACAATTCCTCAGTTTCCCTTTTCCTTTCAATGTTGGAAATTGCTAGAGTCATGTTTCTGCAGAGTGGTATGGTAGATACAGTACATGGCTGCACTGATTCAGGTTTCTTGCAGCTTAAGATTGTTTCTGGAAAGATAAAGGATTGGTTGGTCATGTTTTTGCAGATTGTTGTTGTGATATGGACAAGAATGGTCCGGGTTATGGACTGCAGCACATTCATGTACAGGCTGCCGGTGCTTAGAATTGAGAGTGCCCAAGTACAATTCAAACGTAGGTTAAATGTTGCTTAC 4070 0.4361 MVGNDDPCHLSASRKMFWRSASWSASRTAAGNASSGEADKSFADSGGANGPHSQNRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGARGNGSNGDRLKLDLSSIQHNNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNRITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSLDAMDSRGAFIVHIPSAIYVWIGKSCEAIMERDARGAVGQIVRYEKVQGPIVMIREGDEPAYFWDAFSNFLPLMDKSESGVEDGILTTKFLPGQRKVDAYNVDFEVFKKAITGGFVPPFASSDEHETHLPARESSWSGLRRKVSSANIKEFVSAPRISFPRVYSDSMLCIHASAKLSPSSSLSSSSSSISSSSSPSYVSPDSISSDSSTHSKFLAEGFPDSSSVVLTPIPVSPSLSNFSNLSISSHSTSQTASNSTDILGVKLSRPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLMNDKTHVVDKSSTSQATQEHGFVVNGSVSYFQQSDSKDNFCESNNHANDGGVNSIQKCELALCPNIIDSIHIKESSLVRNSVEPLIDGSKIEDLLLSQSTALKGTNESGLLQYNVSQTLVYHWPSLEKVETFGASHLDSKAVFVIFSPSMHVHTGNILYIWVGRSFNCETSHAHLRIDKQTNYLGAVDWNQIGCDLLARFSLPKNTVTKEVVPCQVNCSSADCTEVVRIVVDNAKKADPKAQALKAAKVVKSGGQLFKKKVKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFVVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDIMNLSSLFHREIKQSLCVRDLAVSNAWHFVVLCHNWMMLSQHSKEVLAIPCWVTLTRKQFMAFFPLMNTSHSQNLLERSPSLPNNMLGYYLSYIWTSHHNSSVSLFLSMLEIARVMFLQSGMVDTVHGCTDSGFLQLKIVSGKIKDWLVMFLQIVVVIWTRMVRVMDCSTFMYRLPVLRIESAQVQFKRRLNVAY 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00330 1197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 157 299 IPR020422 GO:0006470|GO:0008138
Pste5g00330 1197 FunFam 60S ribosomal protein L23a 890 1009 - -
Pste5g00330 1197 Pfam Ribosomal protein L23, N-terminal domain 870 920 IPR005633 -
Pste5g00330 1197 Pfam Ribosomal protein L23 930 991 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pste5g00330 1197 Gene3D Severin 308 404 IPR029006 -
Pste5g00330 1197 Gene3D Protein tyrosine phosphatase superfamily 132 299 IPR029021 -
Pste5g00330 1197 PANTHER MKPA PROTEIN 8 844 - -
Pste5g00330 1197 Pfam Dual specificity phosphatase, catalytic domain 165 295 IPR000340 GO:0008138|GO:0016311
Pste5g00330 1197 ProSitePatterns Tyrosine specific protein phosphatases active site. 241 251 IPR016130 GO:0016311|GO:0016791
Pste5g00330 1197 Gene3D - 891 1008 IPR012677 -
Pste5g00330 1197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 298 IPR029021 -
Pste5g00330 1197 Hamap 50S ribosomal protein L23 [rplW]. 930 1010 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pste5g00330 1197 SMART dsp_5 157 296 IPR020422 GO:0006470|GO:0008138
Pste5g00330 1197 MobiDBLite consensus disorder prediction 21 39 - -
Pste5g00330 1197 MobiDBLite consensus disorder prediction 510 536 - -
Pste5g00330 1197 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 927 1001 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pste5g00330 1197 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 216 277 IPR000387 GO:0016311|GO:0016791
Pste5g00330 1197 MobiDBLite consensus disorder prediction 21 78 - -
Pste5g00330 1197 SUPERFAMILY Actin depolymerizing proteins 304 411 - -
Pste5g00330 1197 CDD DSP 158 292 - -
Pste5g00330 1197 MobiDBLite consensus disorder prediction 94 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00330 Pste-Chr5 2234794 2248056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00330 2 193 Protein tyrosine phosphatase (PTP) family AT3G55270 60.938 1.09e-63 230
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00330 5 2234794 2248056 Pste5g00330 5 2234794 2248056 ECH