Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00320 ATGGCGAATTGTTTGATGATGCTATCTCGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGAGTTTGAGGGGAGCTACGCATCAAGCTCTAGGCGTGTCTTCGAGTGCAAGACGTGTAATAGGCAATTCCCTTCATTTCAGGCGCTAGGTGGCCACAGGGCAAGTCACAAGAAGCCTAGGTTGATGGCAGCAGCAGATATAGATGGGCATGGGCAAGGGCAATTGCTTCATGATTCACCCCCAAAGCCTAAGACTCATGAGTGCTCCATTTGTGGCTTGGAGTTTGCTATTGGCCAAGCCTTGGGAGGCCACATGAGGAGACACAGAGCTGCCAATTTGAATGCTAACCTGCACACCACTACTACTTCTTTTCATTCCTCACCAAACAACAAACCTCCCCACAAGAGATCACTTTTCGTTTTCGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGTTTTTCAACATCCCAAAGCCCACTACTTTCGTTGATTATTTCTATTAA 507 0.4734 MANCLMMLSRGGGGGGGGGGEFEGSYASSSRRVFECKTCNRQFPSFQALGGHRASHKKPRLMAAADIDGHGQGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNANLHTTTTSFHSSPNNKPPHKRSLFVFDLNLTPFENDLEFFNIPKPTTFVDYFY 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00320 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Pste5g00320 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Pste5g00320 168 SUPERFAMILY beta-beta-alpha zinc fingers 32 108 IPR036236 -
Pste5g00320 168 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pste5g00320 168 SMART c2h2final6 34 56 IPR013087 -
Pste5g00320 168 SMART c2h2final6 86 108 IPR013087 -
Pste5g00320 168 Gene3D Classic Zinc Finger 32 108 - -
Pste5g00320 168 Pfam C2H2-type zinc finger 86 110 - -
Pste5g00320 168 Pfam C2H2-type zinc finger 33 59 - -
Pste5g00320 168 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Pste5g00320 168 PANTHER ZINC FINGER PROTEIN ZAT5 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00320 Pste-Chr5 2142083 2142589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00320 1 155 C2H2 Transcription Factor Family AT2G37430 43.478 8.96e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g00320 zf-C2H2_6 8.1e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00320 5 2142083 2142589 Pste5g00320 5 2142083 2142589 ECH