Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00307 ATTCCCAAAGAAATAAGCATCATATCATTTACATTACCAAACTCTCTATGTTCCATTAATTCTCTCTCATCAACACCAAAATCCTCGTATGAGCTCTTAATTCACTCAACTTCCTCTCCACTGGACCTTTTCCCAAGCAAGACAATTATTTGCATCAAAGGTGTCAACATGTCAGAAGCCAGTCCTTATTCCATTGATATTGCAAAAATGAGAGATGCTCTTCTATCATCGGTTTCTTCAAGGCTTCATTGTTATGGAAGCGAAGAAGTTCAGTTAGAAAGTTTAGATGGCTCCATGCAGATGAACGACCATAATGACTACCATAGCAATGGCTGCAATATGGAGTCTAGAATATTCAACAATGACAGGCAATTGGGTCAAGGTTTCCATAGCCTGTCCCAGTCTCTGATTTATGACAACAATCATCACCCAGGTAGTCTCTATGCCATCCAAAGCAGCAAAGACATTTGTCAGCAATCGTTGTTACTTGACAAAGACCCTTCTCAATATGAAGGAGTGTGCGGACATCCTAGAAAACGCCCATTTGAGTACACTGACATGTCCTTTAGGAAAAAATTAAAAAGTAATTCCAAAAGCAAAATCTCAATCATGGAACCAAAATGGCATCATGAAAAAGAAGTTTCAGAGATAATCCCTCCGCACAAATTGCATGTGCCTATGAGGGCAAATCAGAAGCTTGGCGACAAAATTACAACGCTACAAAAGTTAGTTTCACCGTTTGGCAAGACTGACACCGCCTCAGTTCTTCATGAGGCTTCTCTTTATATCAAGCTTCTTCAAGCACAAATCCGGACTTTGTTTCAGATGCTGAGCTTCTCTTACTTTAGTACAATTAAAGATCCCCGTACTCAGGAATGTGGGAACAAATTGCAGGTAGACCTAGGGAGCAGAGGACTTTGTTTGGTTCCCATGTCAATTACAGAGAAAGTAACAACGGTGGACCAGATTCATTATGCTTCAGCCTCAAGAATTATTCCCTCCTCAAATTTCTAATTCAGCATCTATGAACTGCACGATGCTGACGATGAACATATTTAGGGACTTAGGTCCTTCATAAGCATGGTTGTAAATGAGTTGGCAAATACTTGTCTTCAGGACATCAGTTTGAACATGCACTAAACAATTGATTGCATATTTAG 1160 0.3983 IPKEISIISFTLPNSLCSINSLSSTPKSSYELLIHSTSSPLDLFPSKTIICIKGVNMSEASPYSIDIAKMRDALLSSVSSRLHCYGSEEVQLESLDGSMQMNDHNDYHSNGCNMESRIFNNDRQLGQGFHSLSQSLIYDNNHHPGSLYAIQSSKDICQQSLLLDKDPSQYEGVCGHPRKRPFEYTDMSFRKKLKSNSKSKISIMEPKWHHEKEVSEIIPPHKLHVPMRANQKLGDKITTLQKLVSPFGKTDTASVLHEASLYIKLLQAQIRTLFQMLSFSYFSTIKDPRTQECGNKLQVDLGSRGLCLVPMSITEKVTTVDQIHYASASRIIPSSNF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00307 337 CDD bHLH_AtbHLH_like 231 273 IPR045239 -
Pste5g00307 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 315 - -
Pste5g00307 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
Pste5g00307 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 275 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00307 Pste-Chr5 2071018 2074895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00307 219 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 48.544 1.61e-17 81.3