Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00296 CACTACACACTACACACTACACACATTCTCCAAAACCCTACACTCACTGTATTTCCGCGTTTCCGCGGCATGGACATGTCCCTGGACGACATTATGAAGCGCTCGGCTGCAGCGGCGGCTTCTCGGCGCCGATTCACGGTGTATCGCAACCCCATCCCTCAGACAAGGAAACACACCATGATTCCGTTTCCAGAAATGGTTATGGACGATGACGGTTCTGCTAAGATCGAAAGCGGCACCAAACTCTACATATCTAACTTGGATCATGCAGTTTCCAACGAAGATATCAAGCTACTGTTCTTGGAAGAGGGTGAATTGAAAAGACACTGCATTCATTATGACCAGAGTGGGAGATCAAAGGGAACCGCAGAAGTTGTATTCGTGAGGCATTCTGATGCTTTGGCTGCCATCAATAAATACAACAATATGAGGCTTGATGGAAAAGCATTGCAAATTGAGCTTGTTGGAACAAGTTCGGTTACTCCTGCTGTTGCACCTCTTTTTCTAAATAACTTACTCGGTAGACCAAATGATGTCCATTTAAGGGTTGGAGGTAGCGGGTTCCACAATGACTTTGCACAGGGATACTTTCCAGAGTACCGTGGAGGAGAGAACCATACTCGAAAGGTATCATTTAGAGATCTTGATCATGCCTTGGAGAGGTCTCACTGCTTTTCCAGAGGCCACGCAAAAGTAAAGAACAATATTAGAAAGGTGACTGTTAAAGATCTTGATGATGACTTGGAGAGGTATCACTTAGCGGCCAAGAGGATAAAAAGACAAAATGGAAAGTGAGATAACCACTGATAAGCTACAAGACTCATACTCTAAGTAAACAGGTCTGAAAAACATTGGATATAACATAACGGTAATATGGTTCTGCG 884 0.4423 MDMSLDDIMKRSAAAAASRRRFTVYRNPIPQTRKHTMIPFPEMVMDDDGSAKIESGTKLYISNLDHAVSNEDIKLLFLEEGELKRHCIHYDQSGRSKGTAEVVFVRHSDALAAINKYNNMRLDGKALQIELVGTSSVTPAVAPLFLNNLLGRPNDVHLRVGGSGFHNDFAQGYFPEYRGGENHTRKVSFRDLDHALERSHCFSRGHAKVKNNIRKVTVKDLDDDLERYHLAAKRIKRQNGK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00296 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 134 IPR000504 GO:0003723
Pste5g00296 241 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 231 - -
Pste5g00296 241 Coils Coil 218 238 - -
Pste5g00296 241 SMART rrm1_1 58 130 IPR000504 GO:0003723
Pste5g00296 241 Gene3D - 44 186 IPR012677 -
Pste5g00296 241 CDD RRM_THOC4 57 131 - -
Pste5g00296 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 127 IPR000504 GO:0003723
Pste5g00296 241 SUPERFAMILY RNA-binding domain, RBD 41 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00296 Pste-Chr5 2010331 2012656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00296 48 132 Eukaryotic Initiation Factors Gene Family AT2G23350 36.471 3.79e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00296 5 2010331 2012656 Pste5g00296 5 2010331 2012656 ECH