Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00295 ATTCCCTCCCTTTCCTGGAATTCTGGTTAGTTGGCGCATCTTTTTCTTTTCCTCGCTTCCGAAGGAACTCTCCACATTCCTTATTCATTCCTAAGGGAGAGAAAAAGAGAGAGAGAGAGAGATTTGGCTTTCTCTCCTCTGTCATGGGGACTCCCCAATTCCCAAATCTCGGCAAGCATTGTTCTGTCTCCGATTGCAACCAGCTTGATTTCTTGCCCTTCACATGCGATTGCTGTAATCAGGTATATTGTTTGGAGCACCGAGGTTATATTAAACATAAGTGCACAAAAGCCAACAAACAAGATGTCACTGTTGTCATATGTCCTCTGTGTGCCAAAGGGGTTCGCCTTATTAAAGATCAAGATCCAAACATAACTTGGGAGAATCACGTTAACGTTGAGTGTGACCCATCTAATTACGAGAAAGTCACAAAGAAGAGAAAATGCCCTGCCCCTGAATGCAAAGAGGTTTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCTTGAAAGACCACTGTCTGAAGCACCGGTTTGGCTCTGATCACAAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCATTCATGAGTCTTTTGAACAGGAATAGAAAAGAGGAGCCAAAGCCCAATTTAACTTCAACAGCATCATCGAAGTGGACTTCAAGCTTTCTCAACGTGGCTTCTAATATTCGTGCTTCAGCTGAAGCTGGCATGTCAAAATTGAGTGGTGAAATTAACCAAGTTTGGCAATCAGCTAGAGATGGGGTGGGACAGAGTAGTAGCAGTGGAAATAGAAATGATCATCAAGGGGAACAATGCCCTCAGTGTGGTGCAAATTTTTCCTCTGTGACTGCTTTGGTGGATCATGTGCAACAAGTTCATGAAAAGAATGGGAACCCATTAGGGATAAAGAAAGTTACCATTGATGCATGTCCCAAGTGTAGTAGAGGGTTTCTAGACCCGGTGTCCCTTGTGGAGCATGTTGAGAGGGGTCATGGAGGTGGTACAGGGGCGTAGGAAATTGAATTTTTTAATGGATATTATTTTTATACATATGATATAAACAACGTTTTGTCCTGTTTTATAGCAAAAGAATGTGAATACTAATTTGAATATGATGCTAGATTTATTCACAATGACATAGTAATTGTGTCATTATTTGATGGC 1172 0.4172 MGTPQFPNLGKHCSVSDCNQLDFLPFTCDCCNQVYCLEHRGYIKHKCTKANKQDVTVVICPLCAKGVRLIKDQDPNITWENHVNVECDPSNYEKVTKKRKCPAPECKEVLVFSNTIKCRDCLKDHCLKHRFGSDHKCSGPKKLETSFSFMSLLNRNRKEEPKPNLTSTASSKWTSSFLNVASNIRASAEAGMSKLSGEINQVWQSARDGVGQSSSSGNRNDHQGEQCPQCGANFSSVTALVDHVQQVHEKNGNPLGIKKVTIDACPKCSRGFLDPVSLVEHVERGHGGGTGA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00295 292 Gene3D - 2 58 IPR035896 -
Pste5g00295 292 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Pste5g00295 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Pste5g00295 292 Gene3D - 81 150 IPR035896 -
Pste5g00295 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pste5g00295 292 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Pste5g00295 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 253 IPR013087 -
Pste5g00295 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Pste5g00295 292 SUPERFAMILY AN1-like Zinc finger 61 143 IPR035896 -
Pste5g00295 292 Pfam C2H2-type zinc finger 226 248 - -
Pste5g00295 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pste5g00295 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pste5g00295 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pste5g00295 292 Gene3D Classic Zinc Finger 196 290 - -
Pste5g00295 292 MobiDBLite consensus disorder prediction 206 226 - -
Pste5g00295 292 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Pste5g00295 292 SMART c2h2final6 225 248 IPR013087 -
Pste5g00295 292 SMART c2h2final6 263 286 IPR013087 -
Pste5g00295 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00295 Pste-Chr5 2004400 2005953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00295 1 292 C2H2 Transcription Factor Family AT2G41835 57.143 1.79e-110 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g00295 zf-AN1 6.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00295 5 2004400 2005953 Pste5g00295 5 2004400 2005953 ECH