Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste5g00231 | CGCGGTTATCCTCATTCTCAACCACGCTCACTCCCCGTCCTCTTCCATGGCCAGCACCGCAACCAACTATCTCCAACTCGCCGGCACCACCGCGTCGACTCGCCGGAGAACCTCCATTTCATGCAAGAAGAAGAACAAGTTAGCTTTCAAGGAAACAAAGGAAGGCTTCGTGGACTACGACAGAGGCCAACACGAGGTCTCGACCAAAATCTCCGGCCTCCGCAAGGACGACATCCCCAACCGTTACCGTATCCGCGTCGCCGGAAATCGCTTCCAGATGGACTGGACGGTGTCCGAGGTCGCCGACCTCGTCCTCTCCCTCGACCTTTCTGACGACGTCGATGGCTTACTCAACCGTTGGATAGGACGCTTCGCACGCAAGAACTTTCCATTCCTCATCAAGGAGTTGACTCAGCGAGGGTCCATTGAACATTGTAACCGCGTGTTCCGGTGGATGAAGCACCAGCGGAATTACTGTGCGCGCAATGATATATACAACATGATGATTAGATGTAAACCTGATGTTGAAACTTACAATGCACTTATCAATGCGCATGGTCGAGCTGGGCAATGGCGTTGGGCTATGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCTAGTCGGTCAACTTATAACAACTTGATAAATGCTTGTGGTTCTAGTGGGAATTGGAAAGAGGCACTTAATGTTTGCAAGAAAATGACAGACAACGGTGTTGGGCCTGATCTTGTTACTCACAATATTATACTATCTGCATTCAAAAGTGGGGCTCAGTATTCTAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATCGTTATCCATTGTCTAGTGAAGCTTCGAAAATTTGACAAAGCTATTGATATTTTTAACTCCATGAGGGAGAAGAAGTCAGAATGTACCCCTGATGTTGTTACGTTCACTAGCATCATTCACTTGTATTCTGCATGTGGGCAAGTTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCGGAAGGGCTGAAACCTAATATAGTGTCGTATAATGCTCTAATAGGTGCATATGCTGCTCTTGGGATGCACAATGAGGCACTTTTGGCTTTCAATGAGATAAAACAAAATGGTTTCCGAGCTGATATTGTATCTTATACATCTCTCCTTAATGCTTATGGAAGGTCACAAATGCCACAGAAAGCAAGGGAAATATTTGATATGATGAAGAGAAACAAGTTGAAGCCAAATCTTGTCACTTACAATGCACTGATTGATGCCTATGGATCTACTGGTATGCTGGCAGAGGCAATTGAAATCTTGCGAGAAATGGAACAAGATGGAATTCAGCCAAATGTTGTCTCAATATGCACACTTTTGGCTGCCTGTGGACGATGCAGTCGGAAGTTGAAGATTGACACAGTGCTAACAGCAGCTGAGATGCGAGGAATTAAATTAAACACAGTTGCATATAATGCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCTATAGGCTTGTATAAATCGATGAGGAAGAAAAGAATTAAAACTGATTCTGTTACTTACACTGTGTTGATTAGTGGTTGTTGTAAGATGTCCAAATATGGTGAAGCCTTATCTTTTATGGAAGAAATGATGCATCTGAAACTTTCTTTGTCCAAAGAGGTCTATTCATCAATCATATGTGCCTATAGCAAACAGGGCATGGTCTTAGAAGCAGAATCTACATTCAATTTGATGAAATCATCTGGTTGTTACCCTGATGTGATCACATACACTGCCATGCTCGATGCTTACAATTCGGCTGAGAATTGGGAGAAAGCTTATGAACTATTTGAAGAAATGGAAGCAAGCGGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATGTTTTAACAAAGGTGGCCAACCGGGAAGGGTTCTTAATCTTGCAGAAAACTGGAGAACAGCTGTTGATATGATCACATACATAGAACCCTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGACTGAAACTATGATGAAGTTATTCTTCAAAATGTTGGCATCAGGCACTGATGTAAACTTAAGCACTTACTCTATTTTATTGAAGAACCTTTTATCATCTGGAAACTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAAGATGCAGGAATTCATCCATCAAATACAATGTACAGTGATATATCCTCCTTTTCACAAAAATGCTGTGGGGATGAAAATGCTGCTGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATACAAGGATCAAATTTCTACGAGGCAACCATGTGAATCTCCTATTCTTAGTTGACCATTTTCATGGAATCACCATTTTTGCTTAGCTGTGACACGCTGTTCCAACTGCTGTGGGAATTCTTCCTGTCAGATTTTGTGAAGATTGAAGTTGGAGCTCAACCTAATATATAGGTCATACGCTACCCGTGTATAATGATTATTTTCATGTTACGCCTGCATTATTTTTGTAAATAATCTTATGTTTCCTTCCTCTGTATATACTACGTTTAGATTTAACTGTAAAGTGAAGTTCAATTGGGATTCCGCTAACTAAATAGACTAAATGTGTATTCTTTGGTCAAAGTCGGACTTTGTATAAATGGGAAATATGAACGAAATTGCTATAAAATGTGGCTTTGCCGG | 2739 | 0.4129 | MASTATNYLQLAGTTASTRRRTSISCKKKNKLAFKETKEGFVDYDRGQHEVSTKISGLRKDDIPNRYRIRVAGNRFQMDWTVSEVADLVLSLDLSDDVDGLLNRWIGRFARKNFPFLIKELTQRGSIEHCNRVFRWMKHQRNYCARNDIYNMMIRCKPDVETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRKFDKAIDIFNSMREKKSECTPDVVTFTSIIHLYSACGQVENCEAAFNMMLAEGLKPNIVSYNALIGAYAALGMHNEALLAFNEIKQNGFRADIVSYTSLLNAYGRSQMPQKAREIFDMMKRNKLKPNLVTYNALIDAYGSTGMLAEAIEILREMEQDGIQPNVVSICTLLAACGRCSRKLKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKRIKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLSLSKEVYSSIICAYSKQGMVLEAESTFNLMKSSGCYPDVITYTAMLDAYNSAENWEKAYELFEEMEASGIKLDTIACAALMRCFNKGGQPGRVLNLAENWRTAVDMITYIEPSLPVISSGCLNQFLHSLGKSGKTETMMKLFFKMLASGTDVNLSTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSNTMYSDISSFSQKCCGDENAAVIKERLESLKRKYKDQISTRQPCESPILS | 781 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste5g00231 | 781 | Pfam | Pentatricopeptide repeat domain | 419 | 453 | IPR002885 | - | |
| Pste5g00231 | 781 | Pfam | Pentatricopeptide repeat domain | 684 | 738 | IPR002885 | - | |
| Pste5g00231 | 781 | Pfam | Pentatricopeptide repeat domain | 360 | 418 | IPR002885 | - | |
| Pste5g00231 | 781 | Pfam | PPR repeat family | 263 | 310 | IPR002885 | - | |
| Pste5g00231 | 781 | Pfam | PPR repeat family | 158 | 205 | IPR002885 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 159 | 193 | IPR002885 | - | |
| Pste5g00231 | 781 | SUPERFAMILY | HCP-like | 195 | 431 | - | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 194 | 228 | IPR002885 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 301 | 335 | IPR002885 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 229 | 263 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 231 | 265 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 267 | 298 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 162 | 194 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 549 | 582 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 408 | 442 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 478 | 511 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 513 | 544 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 197 | 229 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 303 | 337 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 583 | 617 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 373 | 406 | IPR002885 | - | |
| Pste5g00231 | 781 | NCBIfam | pentatricopeptide repeat | 338 | 371 | IPR002885 | - | |
| Pste5g00231 | 781 | Gene3D | Tetratricopeptide repeat domain | 459 | 543 | IPR011990 | GO:0005515 | |
| Pste5g00231 | 781 | Gene3D | Tetratricopeptide repeat domain | 244 | 349 | IPR011990 | GO:0005515 | |
| Pste5g00231 | 781 | Gene3D | Tetratricopeptide repeat domain | 350 | 458 | IPR011990 | GO:0005515 | |
| Pste5g00231 | 781 | Gene3D | Tetratricopeptide repeat domain | 82 | 243 | IPR011990 | GO:0005515 | |
| Pste5g00231 | 781 | Gene3D | Tetratricopeptide repeat domain | 544 | 635 | IPR011990 | GO:0005515 | |
| Pste5g00231 | 781 | SUPERFAMILY | TPR-like | 264 | 635 | IPR011990 | GO:0005515 | |
| Pste5g00231 | 781 | Pfam | Pentacotripeptide-repeat region of PRORP | 479 | 650 | IPR033443 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 371 | 405 | IPR002885 | - | |
| Pste5g00231 | 781 | Gene3D | Tetratricopeptide repeat domain | 657 | 776 | IPR011990 | GO:0005515 | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 581 | 615 | IPR002885 | - | |
| Pste5g00231 | 781 | PANTHER | MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE | 658 | 736 | - | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 264 | 298 | IPR002885 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 511 | 545 | IPR002885 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 476 | 510 | IPR002885 | - | |
| Pste5g00231 | 781 | Pfam | PPR repeat | 231 | 257 | IPR002885 | - | |
| Pste5g00231 | 781 | FunFam | Pentatricopeptide repeat-containing protein isoform A | 436 | 542 | - | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 546 | 580 | IPR002885 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 406 | 440 | IPR002885 | - | |
| Pste5g00231 | 781 | FunFam | Os07g0213300 protein | 241 | 355 | - | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 336 | 370 | IPR002885 | - | |
| Pste5g00231 | 781 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 696 | 730 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste5g00231 | 250 | 770 | Glycosyltransferase | AT1G05670 | 24.621 | 3.25e-35 | 141 |