LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00205	GGAGTACGTGGCATATGGTGCATGGCAAGGGTGATGTATAAAAAAAGGGGTAGGGTTAGTGGGTACGTTTCAAGTGTATATTAATTGAAAGAGAGAGGGAGAGAAAGCTAGAAGGAAAATCAATCAAGGTCTTGCAATTCTCATGAACTGTGGAGTCGTGTTGGGTTTCTATTGTTGGGGTTGGGAGTTCTTAACTGCCCTTCTTCTCTTCTCCTCTCTTCAACCTTAATTGTTCATCATTCTCTTCCTCTTCTTAATAATTCCATCAAATTTCAATTTCTCATACACAAATAAAAACATGGAATGTGGAAGGAAGTGCACTCCACCACCGTTTTTGTTGAAGACTTATATGCTTGTGGAGGATCCCGCCACCGACGACGTCGTTTCGTGGAATTCCGACGGTACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCAACACTCTTCAAACACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAATACCTATGGCTTTCGTAAAGTTGCAACAAGCAGATGGGAGTTTTTCAATGAGAGGTTCAGGAAAGGTGAAAGAGAACTGCTATATGAGATTAGGAGAAGAAAAGCTTGGAGCAGCAAGCAACAAACCATTGCACCAAACCAAGGAACACCCCAAGATTCTGATGAAGATCAAAGGTCCTCATCAACCTCATCATCCTCTGGTTACACTACTCTTGTTGATGAAAACAAGCGACTGAAGAAGGAGAACGGGGTGCTCAACTCTGAGCTCTCAACCATGAAAAGAAAGTGCAAGGAACTGCTTGATTTGGTTTCCAAATGTTCTTCACATGCAAAGGAAGATGAAGAAGATGAAAGACCAATGCTCTTTGGAGTGAGACTCGATGTTCAAGGAGGGAGAGAGATGAAAAGGAATAGAGCAGACATAAGTGAAACCGCGAACCTTATGTTGTCTCAATCATGCAAATAGATTTATGCAATACAAGAAGCTTATAAGTATTGAGTATACTAATAATCAAATATTTGGAAATCATGTATTTGATTAATTAGCTAGGCTTGCAAAGAGTATTTTCCCCCTAGCTAGTGTTTTAGTTATACTTTGTATATCGTATTGGGTGCATCAAGGAACTAATTAAAACACTCACCCCTTAAAGCATGTGCTGTAATTATATGTAATGTGATTAGGACCATGAGACGTAATTAAAATAGGCTCAAGTGGCCATTAATTAGTTCATTGTTTGTGTAATGTGACAGACTAAACTTATTGGAGAG	1269	0.4074	MECGRKCTPPPFLLKTYMLVEDPATDDVVSWNSDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFFNERFRKGERELLYEIRRRKAWSSKQQTIAPNQGTPQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLNSELSTMKRKCKELLDLVSKCSSHAKEDEEDERPMLFGVRLDVQGGREMKRNRADISETANLMLSQSCK	222

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00205	222	ProSitePatterns	HSF-type DNA-binding domain signature.	51	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00205	222	SUPERFAMILY	"Winged helix" DNA-binding domain	8	101	IPR036390	-
	Pste5g00205	222	Coils	Coil	143	163	-	-
	Pste5g00205	222	Pfam	HSF-type DNA-binding	12	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00205	222	FunFam	Heat stress transcription factor B-4	4	102	-	-
	Pste5g00205	222	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	8	171	IPR027725	-
	Pste5g00205	222	MobiDBLite	consensus disorder prediction	107	141	-	-
	Pste5g00205	222	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00205	222	PRINTS	Heat shock factor (HSF) domain signature	12	35	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00205	222	PRINTS	Heat shock factor (HSF) domain signature	50	62	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00205	222	Gene3D	-	4	102	IPR036388	-
	Pste5g00205	222	MobiDBLite	consensus disorder prediction	107	140	-	-
	Pste5g00205	222	SMART	hsfneu3	8	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00205	Pste-Chr5	1549809	1556193	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00205	9	173	HSF	AT2G41690	62.011	1.57e-71	216

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pste5g00205		HSF_DNA-bind	3.1e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g00205	5	1549809	1556193	Pste5g00205	5	1549809	1556193	ECH
	Pste5g00205	5	1549809	1556193	Pste4g03081	4	22363301	22367107	PCT