Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00201 ATGGTGTCTCGAATGCATTGGCCATGTGTACTGTATAAGGCAAGAAAGTATATTGATTACAGGTCTGTTTTGATCCGTGTAAGTTCTGTTTGCAGGTTATTGGGTTTTCCTCTCCGTCTTAGACGAAATTATCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTCACCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGATCTGACCAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATCTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAGGCTGGATGGTGGAGGCAAAAGAATGATTGTGTATCACTATCCATGTCCTCCAAGCCTGCAAGAGGCAGAACACGTAGAAATAGAGAAGAGATGACAAAGCATGGGAAAAGCAAGTATTGGTATAGTCCATTTCTAATGGCGTGTTTCAATCCTGAAACAGAGGAGTATCAAAGCGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACGTTGAGATGAAAGAATTATTCTCTGGGGACAAAGTCTTGTCCAAAAAGCCACCATATTATCACACAGGAGAGGCACCAGACATGTGGTTTTGTCCACAAGTAGTTTGGGAAATAAGAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCACGAGGCATCTCAATCAGATTTCCAAGATTTATTCGCTCTGTCTCAGACAGAAACCCCGATGAGTGTAGCACGACTGCCGATATAGTTGAGATGTTTCATTCTCAGACTCGGAAGATGGATATCACAGCTGAAGACTGATTGTTGATTTGTTTTGTGTATATATATGTTCAGTTCGTGATGTAAATTTTTCTAGGTATCAGCTCATTGAAGATTATACCGTTTCGGCTTGTAGGATTCATGTTAGACCACAGAATTTACCCTATCCCACTTAAATTGTGCCAACTTCTTTCCACTGTGATCACACATCTAATTGACCAACGGATTCAGTCCTCCCATCATACAACTTTTTATGGGTTTGATACAATCAATGCTACGTGGTTGGTTAGATATTATCAATGAGAGTAGTAATTTTCTCTTCTTCACAACCAGTAAAAACATAGGCGTGATAATGCATGAATATTCGCATTTCTATTTTAATGCTATAATAATT 1315 0.3932 MVSRMHWPCVLYKARKYIDYRSVLIRVSSVCRLLGFPLRLRRNYLKDLFYDEKPGYFEYAKETTIEADDACFTCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDQWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWWRQKNDCVSLSMSSKPARGRTRRNREEMTKHGKSKYWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYVEMKELFSGDKVLSKKPPYYHTGEAPDMWFCPQVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRSVSDRNPDECSTTADIVEMFHSQTRKMDITAED 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00201 320 FunFam DNA ligase 175 319 - -
Pste5g00201 320 Pfam ATP dependent DNA ligase C terminal region 185 291 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pste5g00201 320 ProSiteProfiles ATP-dependent DNA ligase family profile. 33 147 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pste5g00201 320 CDD OBF_DNA_ligase_I 129 309 - -
Pste5g00201 320 Gene3D - 126 152 IPR012340 -
Pste5g00201 320 Gene3D - 171 319 IPR012340 -
Pste5g00201 320 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 33 121 - -
Pste5g00201 320 Pfam ATP dependent DNA ligase domain 33 120 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pste5g00201 320 Gene3D - 37 125 - -
Pste5g00201 320 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 179 312 - -
Pste5g00201 320 SUPERFAMILY Nucleic acid-binding proteins 178 310 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00201 32 310 Core DNA Replication Machinery Family AT1G08130 35.587 4.59e-60 203