Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00198 GAACAGCAGAAATGAAAATGATGGGGGAAATAAATTAAGGATGCGATGTCCCTTAAAGAAGAAGTGAAGTGAATGGATTTGGAAAGCGTAGACTCTAGGGAGGTATTCGTGAGAGCCCTGAAAAGGCTTGAATCGGAATCCCCTCCAGAGGGCCTCTCAGAGCTCCCGTCTTCCATTCCTCCCTCGAAGCTGATACCCCACACCCGCTTCCTCGTCGACGCCTTCCGCCACTCCGGCCCCCACTCCCACACCTACTTCCTCTCCCACTTCCACTCCGACCACTGCATGGGCTCTCCCCTCCTGGTCCCATGGCCTCATCTTCTGCTCCCCACCACCGCCTCCCTCCTCCGCCGTATCCTCCTCCTCCCTCCCCCTCCTCTTCCCCTTCCCTCCACTAGCCCCTCCTCATCGACGGCGCCCATGTCACCCTCCTCGACGCCAACCACTGCCCCAGCGCCGTCCAATTCCTCTTCTCCGTCCCCCTCCCCTCCCTCTCCCTCTCCCTCAGGTACGTCCACACCGGCGATTTCCGCTTCTCTACTTCCATGCTCTCCAGACCACTTCTCCCCCTTCGTCGGTGCCGATGCGCTTTTCCTCGACACCACCTATTGTAACCCTAAGTTCGTCTTCCCCTCGCAACACGACTCTATTGATTACATTGCCTCCGTTGTTGAGAGCCTTGAGCGTGACTCTCCCCATTCTAATCATAAAGTTTTGTTCCTTGTTGCTACTTATGTCCTTGGGAAGGAGAAGATTTTGCTTGAGCTTGCTCGTCGGTTTAAGAGGAAGATACACGTCGATGCTAGGAAGATGGAGGTTTTACAGGTTCTTGGGTTTGGGGACACTGGTCCCTTTACCCAGGATTTGTTGGAGACTAATATTCATGTCGTTGGGTGGAACGTCTTGGGGGATACCTGGCCTTACTTTAGGCCCAATTTTGTTAGGATGAAGGAGCTTATGGCTGAGAGAGGGGGATCTTTCTCCAAGGTTGTCGGTTTTGTTCCTACTGGATGGACCTATGAGGTGAAGCGGAGTAGGTTTCCTGTCAAGTCCAAGGATTCCTTTCAGATTCATCTTGTGCCCTATAGCGAGCACTCCAACTATGATGAGCTCACGCAGTATGTCAAGTTTTTGAAGCCCAAGCGTGTTGTCCCCACGGTGGGTTTCGATGTTGGCAAGAGTGGCAGTAAACATGCTCACAACATCACCAAGTATTTTGCCCACTTGGTTGATGAAACTGCCAACAAGCTGGAGTTTTTAAGGGGTTTTCATCGTGCTCCCTCTGAAGTGGATTTCATGGTTGAGAACTCTTCCACTGATGCAACGGAACCGGGGCAAGGCATGGAGAAAGAATTCAATCCATCAGAGACAAAAGGTCATAAACTTGAGCCAGATGTGGCTGTGGGTTTGTCTTCTTTTGTGGCAGATACTTGTACCCGAGATCCTACTTTGCTCAATGATGAAGAAAAGGAGAAAATAATTCAAGAACTTAGTTCTTGTTTGCCCTCATGGGTCACCCGAAACCAGTTGTTGGATCTGATCAGCATCTCAGGGAGCAATTTTGTTGAAGCTGTTTCTAATTTCTATGAACATGAAACTAAATATCATGACCAAGTGATTTCCTGTCAAACTCCTGTCATTGATGTCGCTGATTCCCCGACAAAACCATGCCTTAATACAAACAACACATGCAAAAATATTGACATTTTTCCAAGTCAAGACTCTAAATTTACTATGCTGAGGCGAACAGTGCCTACTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTAGTGACAGCAAGCAAAACAAAAAATCCAAAGTCAAAGCAAAATCTGCACCAAGTGATTCAAAGCAGTCCACAATTACAAGATTCTTCAGTAAAGTAACACCTGAGATGCATGGTGGCACTCAATCTGATAATCCTGAACCAAATCTTGACCAAAACTCAAAAGTTGAACTCTTGTTACCGACTGACGTTGGACAAGTGTACAAGGATGAAATAGATAATTTTTTGCAAATAGTAAATGGGAACGAGTCATTAAGAAAATATGCCATCACTATAATTGAGAAGGCAAAAGGAGATGTAAATAAGGCATTGGACATATATTACTGTAATCCTAGCAATCTTGGTGAAAATGAAATATTAGTTCAAGAGGAGTGCAAGATTGATAGACCTGTTGTGAAGAAACATGCCTCAGAGGAATTAATTATTCCCAATATTTCTGACCTGAAAGTGTTAAAAGATACTGTAGATACTACTCATCTATCTCTACCACCAGAGAAATACAACCCTGAAGAACATGCTTGTTGGAGATATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTTAACCTGCTTGAGGGGGAGAAAGGAAAGATTAAAGCTACTGCATTGCTATGTAATATGTTCAGAAGTTTGTTGGCCTTATCTCCAGCAGATGTGCTTCCTGCTGTGTATCTATGCACTAACAAAATTGCTGCAGATCATGAAAATAAGGAGCTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTCAAGAGGCATGCGGAACAAACCGATTGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAATGTCATCAAACACAGAGATTGCTTGCACCGCATACACCGCTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTAATGCGTTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTGAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAACTCTTTCCCTACTTTGCACCATGAAGGAACTGCAGACAATTTGAAGGAGAAACTTCAGGATATCATAATTCCATCTCTCATGAACAAAGGCATTGATTTTTCACATTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAATATGATGGTCAGCGAGCTCAAATTCACAAATTAATTGATGGATCAGTTCGTGTTTTTTCAAGAAATGGAGATGAATCAACTTCAAGATTTCCTGATCTGATTGACATAATTAAGGAATTCAGCAAACCTGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGGTATTGACAGAAATAATGGATATAGGATTAGGTCTTTCCAGGAACTATCTTCCCGCGGGAGAGGTGGCAAAGATACGTTTGTTACTGCAGAGAGCATCAAGGTTCAATATTTGCATGCTTAA 3387 0.4426 MDLESVDSREVFVRALKRLESESPPEGLSELPSSIPPSKLIPHTRFLVDAFRHSGPHSHTYFLSHFHSDHCMGSPLLVPWPHLLLPTTASLLRRILLLPPPPLPLPSTSPSSSTAPMSPSSTPTTAPAPSNSSSPSPSPPSPSPSGTSTPAISASLLPCSPDHFSPFVGADALFLDTTYCNPKFVFPSQHDSIDYIASVVESLERDSPHSNHKVLFLVATYVLGKEKILLELARRFKRKIHVDARKMEVLQVLGFGDTGPFTQDLLETNIHVVGWNVLGDTWPYFRPNFVRMKELMAERGGSFSKVVGFVPTGWTYEVKRSRFPVKSKDSFQIHLVPYSEHSNYDELTQYVKFLKPKRVVPTVGFDVGKSGSKHAHNITKYFAHLVDETANKLEFLRGFHRAPSEVDFMVENSSTDATEPGQGMEKEFNPSETKGHKLEPDVAVGLSSFVADTCTRDPTLLNDEEKEKIIQELSSCLPSWVTRNQLLDLISISGSNFVEAVSNFYEHETKYHDQVISCQTPVIDVADSPTKPCLNTNNTCKNIDIFPSQDSKFTMLRRTVPTPISPAKRKRSSDSKQNKKSKVKAKSAPSDSKQSTITRFFSKVTPEMHGGTQSDNPEPNLDQNSKVELLLPTDVGQVYKDEIDNFLQIVNGNESLRKYAITIIEKAKGDVNKALDIYYCNPSNLGENEILVQEECKIDRPVVKKHASEELIIPNISDLKVLKDTVDTTHLSLPPEKYNPEEHACWRYGQPAPYLHIARTFNLLEGEKGKIKATALLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALQEACGTNRLKIREMYNKFGDLGDVAQECHQTQRLLAPHTPLLIKDVFSALQKISVQTGSGSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSFPTLHHEGTADNLKEKLQDIIIPSLMNKGIDFSHSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLIDGSVRVFSRNGDESTSRFPDLIDIIKEFSKPVASTFIMDAEIVGIDRNNGYRIRSFQELSSRGRGGKDTFVTAESIKVQYLHA 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00198 1104 MobiDBLite consensus disorder prediction 556 597 - -
Pste5g00198 1104 Gene3D - 33 111 IPR036866 -
Pste5g00198 1104 MobiDBLite consensus disorder prediction 106 150 - -
Pste5g00198 1104 Pfam DNA ligase N terminus 753 929 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste5g00198 1104 Pfam ATP dependent DNA ligase domain 983 1100 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pste5g00198 1104 Gene3D - 185 341 - -
Pste5g00198 1104 MobiDBLite consensus disorder prediction 130 146 - -
Pste5g00198 1104 SUPERFAMILY Metallo-hydrolase/oxidoreductase 163 364 IPR036866 -
Pste5g00198 1104 FunFam DNA ligase 185 341 - -
Pste5g00198 1104 Gene3D DNA ligase/mRNA capping enzyme 983 1103 - -
Pste5g00198 1104 MobiDBLite consensus disorder prediction 110 129 - -
Pste5g00198 1104 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1007 1015 IPR016059 GO:0003909
Pste5g00198 1104 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 272 1100 - -
Pste5g00198 1104 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 733 940 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste5g00198 1104 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 978 1101 - -
Pste5g00198 1104 SUPERFAMILY Metallo-hydrolase/oxidoreductase 57 364 IPR036866 -
Pste5g00198 1104 Gene3D - 730 982 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste5g00198 1104 MobiDBLite consensus disorder prediction 414 435 - -
Pste5g00198 1104 Pfam DNA repair metallo-beta-lactamase 261 363 IPR011084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00198 Pste-Chr5 1506126 1519771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00198 731 1085 Core DNA Replication Machinery Family AT1G08130 35.967 3.56e-70 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00198 5 1506126 1519771 Pste5g00198 5 1506126 1519771 ECH