LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00176	AAGTATCAATTCCATGTTGCTGTTTAGTGGTCCTGCAGCTGCAAGAATGAAAGGTGTGGTTGTTGAGCCTTGTTTGGTTTTCCTTTTGATTTTGGTGGTAATCTCAAGCAATAGTGGAACGTGTGTTGGTGAGGACGATGTCCAGTGCAGCAATGCTTTTAGGTGCGGAAGTAGTAACTTAAACCTGAAATACCCATTCTGGGGAGGAAACAGAGATGAGTATTGTGGTGTGGTTCTCATCATATGCGAAGATCAAGTCCCCAAGATAAGCATCCATTCCATCAAATACCGTATTCTTGGATGGGATAATACAACACGGATACTCACTGTGGCTAGGGACGATTACTGGGAAGCTAATACCAGTGTGTGTGTGACTGATTACAACAACAACTCTTTTGATCAAACACCTTTCCAATATGATTATGAGGGGCTTGTTAACGTCACGCTCTTTTACAATTGCTCTTCTGATTCACTTCCCAACCCAATAATAACTGGTTCAGCAATCCACTGTGGAGCTGACCCTGTCTACTATGCTCTTGGATCTTTATCTCCATTACCGGGGAGCTCTAGCTCTTGCAAGGTTGTTGTAGTTCCCGTTTTTGAATCCAATTACAACCATTCACTTACATCTTCAAATACAAGTACAAATACAAATACAATAAACGAAGCCTTGAAGAGTGGTTTTAAGTTGATTTGGACGGGAGCAACTTATGAGGAGTGCAGGACATGCACTCATTCTGGTGGAGAGTGTGGTTTTCAAGATGATACCCAATTCCGATGTTTCTGCAAGGATGGACCTCATGCTACTTCATGTGTCAGTGTCACACACACAGGTATGTCTCAGTCTGGTTTTCACATCTTCATCTTCATCACTCTTACTTATGTAACACCAATTCCGTCTGAAAATCAGTATGTTTGGTTCCTTGGTCAAAGATTAATAGTGTCCATTGTCATGTTCTCTGTCTCTGTTATCTACCAAGCTGTTTTTCTAAAGATGCAACTCCTTCCCACCATCCTTTTTTCTTTCTTGGTCATAACCATCCTCCTAAACCAAATTTCAACATCATCTTGTGCTGATGATGTGCATTATCTGAAATGCAGTTCTACATTTCATTGTGCAAATCTCCAAAACCTGAGTTATCCTTTCTGGGGATTCAGTAGACCCCAATACTGTGGCCACCCTGCTTTTATGCTACAATGCACAGGTGAAGTAGCAACAGTTACCATTATGTCAGAGAGTTATAGAGTTCTTGAAGTCAATGACTCTGATCATAAACTCAAACTTGTAAGAACTGACTACTGGAACAACACTTGTCCCACTAGCCTCAGGAACATCACTATAGGTTGCACTTTCTTTGATTATGGTTCAGATTCTCTGAACCTGACTCTCTACTATGACTGTCCTTCCCCATCATTTCTTCAACCAGATAGCTTTTCCCCTCAGTTTAATTGCAGTGTGAATGGAACTCAAATGATTAACTACTTTGTGGTGAAGAACATGCTTGAAAATGCTCAGAATTCGATCTCATTAAGTGAAAGACTTGGAACATGCAAATCTAGAGTTTTACTTCCAATTTTGGAGTCAGAAGCCCAAGTGCTAGAGACAAATTCAACAGTTGAAAATTTGAAGGCCGCTCTTGATAATGGTTTTGGCGTGGATTGGGATGCAAACAATAGTTTGTGTGATGAATGCCAAAGCTCCGGTGGATATTGTGGGTATAACCCTAGCTCAACTGAATTCGCTTGCCATTGCAGGGATGGATCTTTTCCATCTACATGTAAATCAGTTTGTTCGAGCACGTGTCGACATACACAAATGCTTGAGTTGTGGTCCAAACTTGAATTCATGATTCAAAAGAAAACTACCAGAAACAAAGCTCATCTTGCCAGACGATTGGTGAAACTAGAGTACAAGGATGGCCAAGGCAAAAGTGAGATCCAAAGGAAGAAGGAGTTCCATGTAAGAGGCAAAAGCAAGGAGAAAGAACATTCTAAGTCTCGTTCTAAAGTAAGATGTTACTATTGTGGCAAGGAAGGACATATAAAGTATGAACGTAGATTCTTGGAGAGAGATCAGAAGGTTGGGATTATCCACGAAGATCAATTGGAGTCCAACAAGAAAAATGATAAGTCTACTACAGTCATCGCAGCAGACAATGATGACATCTTCCTTATTGGAGAAGACAATTACAAGCAACAACATTTTGAGTGCCCGAAGGAAAAGCAAACAATAATGTTGTCCATCACGGCCGCCATCATCATCATCATCTTCTCCCTCTACCATACGACGTCGCTGCCACCCCATGCAGCACTATCTAGCTGCAATGTCACCTCCTTCAACTGCGGCTACGTCACCAACCTTTCCTACCCTTTCACCGGCGGTGAGCGCCCCTCCTTCTGTGGGCCACCACAGTTCCATTTGAGCTGCCAAAACGGTGTCGTCCCCGAGTTGAGCATCAGCATCTCATCAGTGGGTTACCGAGTCATTGCTATCAACTCAGAGGCTCACACCCTCACTTTAGCCAGATTAGACCTCTGGAACGAGACATGTACCCATGTGTACGTCAACTCGTCAACTTTTGATGATAACGCCTTCAGCTACGGTTCGGGGAACCAGAACCTGTCTTTGTTTTATGAGTGTAAGCCTTCTTCTGCGTTCAGCCAAACGCCACAAAATTTGTTTCATTGTTTCAGTAACGGGAATAAGAATAACTCTTATTCTTTGCTTGGTCCGTTTCCTTTGGACCCCATTCTTGCTTTTGTTGAATGTGATGAACAAGTTGAGGTGCCTATTCTTAAAGAGCAGGCTGATAGGCTTGTGAAAAACCGGTCTTTGCTTGGGGAGGTTTTGATGCAGGGCTTTAATGTCAACTATACCAATCCTTATGAGCGTGAGTGCGATGAGTGTCTTCGTTCTGGTGGCCTTTGTGGGTTTGATTCTGATAAGAATGAACCCATTTGTATTTGTGGGGATCAGTTGTGTCCAACTCCAGAGAAAAGCTCTAGCAAAGTGGGTGTTGTAATTGGCGCAAGTGTAGGAGGAGTTGTAGTCCTTGTTGTGATTCTTGGATGTGTGTATTTTGTGGTGCAAAGAAGGAAAAAAATTGGTTATAAATCAAGAAGCGGGGACCGCTTCGTGGCTTCTTCAAGTGGAGAAACTTTTACATCTACTACTAATACGTCTCGAAGCCTATTTTCTTTCCAATCTTCCCAGTCTGACACAGCCACGCCGCCGAGAAGTCACTACTTTGGTGTCCAGGTATTTACCTATGAGGAACTAGAGGAAGCTACCAAGAACTTCGACCCTTCTAGAGAACTTGGTGAGGGAGGTTTCGGTGTTGTTTACAAAGGTGAACTCAAAGATGGACGTGTAGTTGCAGTGAAACGCCATTTTGAAAGCAACTCTAGACGTATTGCACAGTTCATGAATGAAGTTCAGATTCTAGCCCGCTTAAGGCACAAGAACCTGGTGACACTCTTTGGATGCACCTCTAGACATAGCAGAGAACTTCTCCTTGTTTATGAATTCATACCTAATGGAACAGTGGCTGATCATCTTCAAGGAAAAAGCTCAAAATCAGCTTTACTCCCTTGGCGTATAAGATTGAACATTGCAGTTGAAACGGCTGAGGCTCTAGCCTACCTACATGCAAATGATACCATACACCGTGATGTTAAAACCAACAACCTTCTCCTGGATGATCAATTTCGTGTCAAGGTTGCTGATTTTGGTCTCTCAAGGGATTTCCCAAACCATCTCACTCATGTGTCAACAGCTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATCATCAGTGCTACCAACTCACTGATAAAAGTGATGTTTATAGCTTTGGAGTGGTCTTGGTTGAGCTCATATCATCATTGCAAGCTGTGGACATCAACAGGAATCGCAGTGATGTGAACTTGGCAAACATGGCTATCAATAAAATTCAGAACCAGGAACTGCATGAGTTGGTTGATCCTTACCTTGGGTTTGAAAGGAATTATGCTATAAGGAAAATGACAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAACAAGAAAGAGACATGAGACCCTCCATGAATGAGGTGGTGCAGGTCTTGAGAGAAATCAAGAGTGATGGTCTTTGTACACGGGAAGAGACAGAAGTATTGGAAATTAGGACAGATGAAGCTAAACTTATGAAGAAGGTTCCTCTCCCGGTTTCACCTGATTCAGTTGTTGATAAGTGGGTTAGCGGCTACTCTGTATCTAATAATTCCTCG	4279	0.4267	MLLFSGPAAARMKGVVVEPCLVFLLILVVISSNSGTCVGEDDVQCSNAFRCGSSNLNLKYPFWGGNRDEYCGVVLIICEDQVPKISIHSIKYRILGWDNTTRILTVARDDYWEANTSVCVTDYNNNSFDQTPFQYDYEGLVNVTLFYNCSSDSLPNPIITGSAIHCGADPVYYALGSLSPLPGSSSSCKVVVVPVFESNYNHSLTSSNTSTNTNTINEALKSGFKLIWTGATYEECRTCTHSGGECGFQDDTQFRCFCKDGPHATSCVSVTHTGMSQSGFHIFIFITLTYVTPIPSENQYVWFLGQRLIVSIVMFSVSVIYQAVFLKMQLLPTILFSFLVITILLNQISTSSCADDVHYLKCSSTFHCANLQNLSYPFWGFSRPQYCGHPAFMLQCTGEVATVTIMSESYRVLEVNDSDHKLKLVRTDYWNNTCPTSLRNITIGCTFFDYGSDSLNLTLYYDCPSPSFLQPDSFSPQFNCSVNGTQMINYFVVKNMLENAQNSISLSERLGTCKSRVLLPILESEAQVLETNSTVENLKAALDNGFGVDWDANNSLCDECQSSGGYCGYNPSSTEFACHCRDGSFPSTCKSVCSSTCRHTQMLELWSKLEFMIQKKTTRNKAHLARRLVKLEYKDGQGKSEIQRKKEFHVRGKSKEKEHSKSRSKVRCYYCGKEGHIKYERRFLERDQKVGIIHEDQLESNKKNDKSTTVIAADNDDIFLIGEDNYKQQHFECPKEKQTIMLSITAAIIIIIFSLYHTTSLPPHAALSSCNVTSFNCGYVTNLSYPFTGGERPSFCGPPQFHLSCQNGVVPELSISISSVGYRVIAINSEAHTLTLARLDLWNETCTHVYVNSSTFDDNAFSYGSGNQNLSLFYECKPSSAFSQTPQNLFHCFSNGNKNNSYSLLGPFPLDPILAFVECDEQVEVPILKEQADRLVKNRSLLGEVLMQGFNVNYTNPYERECDECLRSGGLCGFDSDKNEPICICGDQLCPTPEKSSSKVGVVIGASVGGVVVLVVILGCVYFVVQRRKKIGYKSRSGDRFVASSSGETFTSTTNTSRSLFSFQSSQSDTATPPRSHYFGVQVFTYEELEEATKNFDPSRELGEGGFGVVYKGELKDGRVVAVKRHFESNSRRIAQFMNEVQILARLRHKNLVTLFGCTSRHSRELLLVYEFIPNGTVADHLQGKSSKSALLPWRIRLNIAVETAEALAYLHANDTIHRDVKTNNLLLDDQFRVKVADFGLSRDFPNHLTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLVELISSLQAVDINRNRSDVNLANMAINKIQNQELHELVDPYLGFERNYAIRKMTTAVAELAFRCLQQERDMRPSMNEVVQVLREIKSDGLCTREETEVLEIRTDEAKLMKKVPLPVSPDSVVDKWVSGYSVSNNSS	1422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00176	1422	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	23	292	IPR044652	GO:0004672
	Pste5g00176	1422	Pfam	Protein tyrosine and serine/threonine kinase	1099	1368	IPR001245	GO:0004672\|GO:0006468
	Pste5g00176	1422	Pfam	Wall-associated receptor kinase C-terminal	185	261	IPR032872	-
	Pste5g00176	1422	Pfam	Wall-associated receptor kinase C-terminal	915	988	IPR032872	-
	Pste5g00176	1422	Pfam	Wall-associated receptor kinase C-terminal	489	583	IPR032872	-
	Pste5g00176	1422	Gene3D	Transferase(Phosphotransferase) domain 1	1173	1382	-	-
	Pste5g00176	1422	ProSiteProfiles	Protein kinase domain profile.	1096	1371	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00176	1422	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	1074	1172	-	-
	Pste5g00176	1422	Gene3D	Phosphorylase Kinase; domain 1	1066	1172	-	-
	Pste5g00176	1422	ProSitePatterns	Protein kinases ATP-binding region signature.	1102	1124	IPR017441	GO:0005524
	Pste5g00176	1422	Pfam	Wall-associated receptor kinase galacturonan-binding	362	425	IPR025287	GO:0030247
	Pste5g00176	1422	Pfam	Wall-associated receptor kinase galacturonan-binding	770	838	IPR025287	GO:0030247
	Pste5g00176	1422	FunFam	Wall-associated receptor kinase-like 20	1173	1381	-	-
	Pste5g00176	1422	SUPERFAMILY	Protein kinase-like (PK-like)	1074	1372	IPR011009	-
	Pste5g00176	1422	SMART	serkin_6	1096	1368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00176	Pste-Chr5	1316999	1330251	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00176	775	1422	Receptor kinase-like Gene Family	AT1G25390	43.485	6.84e-143	449

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Pste5g00176		PK_Tyr_Ser-Thr	1.3e-47	CL0016