Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00143 GTCACCGTGGACGCCACGCGCCTGAGTCTTCTCTCCTTAATTTTTGTACCCATTCGCATGTTCTTTTTCCTTGCCAATTTGGTAAATAAACATAGAGAACAAATACCCATTGCAGGACATAGTTTGGGGTGTGTGGCATTTAAGGGTAATCCCACGTCAGCTACTATAAAACAATTGTTGAGAAAGAACTGCGCTCCCCACAATCCAGTACCTGAAAAATCGAGCAAATATAGAGGATCACAATCTTGTGTCACAGTATCCTTCAAAATGCGGATGAGTTGCAACGGATGTCGAGTTCTGAGAAAAGGTTGCAGCGAGAATTGCAGCATCAGGCCCTGTTTGCAATGGATCAAAAGCCCAGAATCCCAAGCCAATGCTACGGTGTTTCTCGCTAAGTTCTACGGCCGTGCGGGTCTCATGAATCTCGTGAACGCAGGCCCCGAACATCTTCGTCCAGCCATCTTTCGTTCCTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCAATTTACGGTTCAGTAGGTTTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAAGCAGCCGTGGAAAACGTCTTGAAAGGTGTTCCGATTACCCCAATCACTTCGGAAGCTGCGGCTAACGGGAGGGGCCCACCGCTGAAGGCCTACGATATACGCCACGTGTCGAAAGATGAGAACTCGGTGGCGTCCAACGAAACTGGGTCGAGAGTGAAAAGATCTCTGGCGAAGGCCAAGGGCAATAGTAGTAAAGGGAAGGATTCCTCGACATGCGAGTGGAGCGAGGAGGTTTTGAACCGCTCTGGAAGTGGAAGTCACGATTCCTCGCTCAGCCACCAATCAAATGCCGTGGAACTGGAGAGCGAGAGCATCGTGTCCGCCGAGACTTCCATCCTCTTCCGAGACGAACCAGAATCCAACCCGGATGATGTTGCTTTAGAGCTGACGCTTGGTTTTCAACCACGTTCACGTTCACGTTCACGTTCACGTTCACGTTCCCGTTCCCGTTCCCGTCCCCATCATCACGTGGTTCCCATGAAGAAGAGAAGGATCCACCTGAAGGAGTCTACTGCCTCCTGCACTATGGACCTGGATCTGGATCTTGACCTACCTCTCCAATAG 1122 0.508 VTVDATRLSLLSLIFVPIRMFFFLANLVNKHREQIPIAGHSLGCVAFKGNPTSATIKQLLRKNCAPHNPVPEKSSKYRGSQSCVTVSFKMRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGVPITPITSEAAANGRGPPLKAYDIRHVSKDENSVASNETGSRVKRSLAKAKGNSSKGKDSSTCEWSEEVLNRSGSGSHDSSLSHQSNAVELESESIVSAETSILFRDEPESNPDDVALELTLGFQPRSRSRSRSRSRSRSRSRPHHHVVPMKKRRIHLKESTASCTMDLDLDLDLPLQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00143 373 MobiDBLite consensus disorder prediction 325 345 - -
Pste5g00143 373 ProSiteProfiles LOB domain profile. 92 198 IPR004883 -
Pste5g00143 373 Pfam Lateral organ boundaries (LOB) domain 93 191 IPR004883 -
Pste5g00143 373 MobiDBLite consensus disorder prediction 316 345 - -
Pste5g00143 373 MobiDBLite consensus disorder prediction 225 288 - -
Pste5g00143 373 MobiDBLite consensus disorder prediction 248 288 - -
Pste5g00143 373 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 92 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00143 Pste-Chr5 1069796 1071152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00143 90 366 AS2 family AT3G02550 57.639 6.05e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste5g00143 LOB 3.5e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00143 5 1069796 1071152 Pste5g00143 5 1069796 1071152 ECH