Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00140 CGTTAACGTAAATGTCACCTGTTCAGTGCACGTTAGCAAGCGCCAATGCTTCCATTTCCATAGTCTTTCTCGTCTCTTTCCCTAGCCTTATCCTGCGCACCACTCTGCTCCCCTTTTTCCTTTTAGGGTTACGCTTCTTGATTCTTCGTCCCAGAGCTAGGGTTCCTTCGTTCTCATCGTAGTTAGTAGCATCTCAGCTCATGGATCACAGACCGAAGTCCAAGGACTCACTCTCTTACTCCACTCTCTTCAATCTGGAGCCTTTGATGAACTTCCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGACGAGAGCAGAGACAGCCAAGGTGGGGGGATTGCAAATCACAGTAATGGAAATGTGTGTGAGAGGGATGTGAATTTGTTGAAGGGGAGATGGTCTCTAAACAGTGACAGCGACGAGAAGAGTGGTTTTTATGGGACACACATGACGGAGGAACGATATAGATCAATGCTGGGTGAGCATATTCAGAAGTACAAGAGGAGGTTTAAGGATACATTAACCCAAAATCAGGCTGTAATTCCACTAGTGAAAAGCAGCACAGGATTAAAGACTCGTAAGTCAGGGAATGAACGTAGGGGGGGATTACACGCCGCAGAGACTACAACAGAATGGATGAATGATTCCAGTTCTCAGAAACCAGGAAACTACCGTGATGCAGATTTCTTGCCGCAATATGGAACTGCTGATAGGATTATGTATGAACCGGCATCTTTGGATATTGGGGATGGAATTATTTACAAGATCCCTCCAATCTATGATAAGTTGGCTGGAGCTCTGAATCTCCCAAGCTTCTCAGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGAGCAGGCATGGGGGAAGCAATATCCCATTATGAATCACTGCAGGCACGACTGAAGGTCATGTCGGCTACTAATTCCCCTCATAAATTCAGTTTGAAAGTATCTGATGATGGTTTGAATTCCTCCGTTCCGGAAGGCGCTGCTGGAAACATAAGGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATAGAAAGAAGCTTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTAATAGAGAAGGAGGAAATGGAAAGATGCGGAAAAATTTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTCGGTATTTATCATCGAAAGCAGCTTGTTGATGCCAAGAGGGTTCGAATGAAAGTCAGTAGATCCCTTAAATGGACAAGGACTGCCTGTATACGCACCCGGAAACTAGCTAGAGACATGCTATTGTTCTGGAAAAGAATAGATAAGGAGATGACAGAAGTGAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGGCAGCAGCAAAGACTTAATTTTCTCATACAGCAAACTGAACTGTACAGTCACTTTATGCAGAACAAGTCAAACTTGCTATCTTCAGACACTTTATCCAAGGTAGATGAAGAAGAAAATGATGAAGATGCACTGGTTGACTCTTCAGATGCTAGGCCTGAGGAGGAGGAAGATCCTGAAGAAGCTGAATTGAAGAGGGAAGCTTTGAAGGCAGCACAAGAAGCAGTTTCAAAGCAGAGAATGTTGACAAGTGCTTTTGACACTGAATGCTTAAGGCTGCGCCAAGCTGGTGAAACTGATTCGCTTCCACCAGATGTTGCTGGAGCGAGTAATATCGATTTGCAAACCCCCTCCACCATGCCTGTGGCATCCACAGTTCGGACACCCGAATTATTTAAAGGCGTTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCAGATGAAATGGGACTTGGAAAGACCATTCAGGCCATGGCTTTTTTGGCCCATTTAGCTGAGGAAAAAAATATATGGGGACCTTTTCTGGTTGTTGCGCCTGCCTCTGTTTTAAATAATTGGAACGAGGAACTTGAGCGTTTCTGCCCTGAACTGAAAAGACTTCCATATTGGGGTGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATCAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTGGTATCCGATGAGAAGTATTTTCGTCGTGTGAAATGGCAGTATATGGTTTTGGATGAAGCCCAGGCAATCAAAAGCTCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGTCTACTGCTTACTGGTACACCCATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAACAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAATCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTTATTTCTGAGCTGACTACAAAAACTGAGGTTACTGTGCATTGTAAACTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGGATTCTGAATTTAATGAACATAGTTATTCAACTCAGAAAGGTTTGCAACCATCCAGAGTTATTCGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGATATTCCGAATTCCCTTCCACCTCCACCATTTGGGGAGTTGGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCTTATGAGATACCAAAACTTGTCTATCAAGATATTATACAAGGTTCTGAAACTCTCAGTTCATCTGTTGATCGTGGAGTCTCCAGAGAATCTTTTGAGAAACATTTTAATATTTTCAGACCAGAAAATGTTTATCGATCTGTCTTCTCAAAAGATACGTGCATTAAAAGTGGAAATTTTGGTTTTACCCATTTGATGGGTGTGTCTCCACAAGAGGTGACATTTCTGGCTACTGGTTCTTTTATGGAGCGACTGTTATTTTCTATGGTTAGATGGGAACAAAAATTCATTGATGAAGCTGTAGACTTTCTAATGGAGACCATAGATGATGATCCAGCATGTAGTTACCTTGAGAAAGGAACAGTGAGAACAGTTACACGAATGTTATTGGTGCCAACAAGATCCGAGATCCAGTTTCTTCAAAAAAGATTACTAACTGGGCCCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCACATCAAGATAGACTATTTTCAAATGCAAGGCTTCTTCACTCTGCATACACTTATATCCCACAAAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCAGATAGAAACTTCAACTATAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGGTTGTTTGTGGGTTTTGCACGCACATCTGATCACAATGGGCCTAGAAAGCCAGATAGTCCTCATCATTTGATTCAAGAGATAGATTCTGAGCTACCTGTTTCTCAGCCTGCTCTTCAGTTAACGCACAGTATTTTTGGGTCTTCACCACCTATGCGTAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCACCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAACTATAGAAAATATCGGTATTTTAGACTTGATGGATCATCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAACACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGCATCAACTTGACAGCAGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGATTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGCAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTACCGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGTTCAGTTGGAGCAAAAATTAAAAGAAATTCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGGGGTATTCGAGTAAATGAAGATGGTGATGCATCGATGGAAGATCTAACAAGCTCTGTAGCCCAGGGTACTTCAGATTATGATCTTTCCATGGATCCAGAGGGTTCAAAGTCTAGTAATAAAAAGAGAAAAGCAGCATCAGATAGGCCAAAGAATACTCAAAAGATGAGTGAATTTAGTACTATGCCTATGGATGGCGAATTGGATGAAGTTGACCCAGTGGGTCAAAAACTCAAGAGACCGAAGAGGATAAAGAAGAATGTGAACGAAAAATGTGAAGATGCTTTTACCGGGACTGGTACCCCGGTTACAGAACAGACTCAATTTGCACCTCCACGTGATTTTAGTGCCGGAGGTTCTAAAGCAGAATCAGGCCAAGACTGCTGAAGACATAGTGATTCCTGACCATGGCATCTTACAAAAAGTTGGGAGGTTCTATTCTATCAGCCCTGTGGATTGACATTGCGGAGACTGCTAAATTGCCTCTGTAGTTGATCAACAGTTTCTAGTTCCCTATTTCTTGGTTCTTGTTTGACTGCAAATAGTGGCGGCAAAGTTGAGTCCAGACAGGCGAAGCTGTATATCCTAGGTTGTATATAATAGTCCTTAATGATATAGATATTTGATTCGCCTCTCTTCCACAGGGGGGGTGTTTGTAGTTTGTACAGAGTGGGCCATTCTTCCTTGAGTTGATTTTTTATGTGCCACACAAAAGCAATATTTATAACAAATGATGATTACTATACAGTAGCCTTCGTACACTTATTATGACAATCAGGAGCCCGTACTCGATATGCTGACGTGAGATCTATTGTGACCAAGTTTAAGATTAACTTGTTCAATTATCTGGATCAAGAAGACGGTGTGGAATTGATCAGAAGTTACAACCTGGTGGTGGATGGAAAAAGTTTCAATGTCCTATTATGAATGGTGGTCAAATTGTGTTGTGCTTATCTTCTTTCTGCATTTTGATGTAAATAGCAGTGTATTCTATGTAATCTTTTAATATTGCTCTATCCAGAAGAAAAACGTGTTCAAATCATCTGATACACAGTGAATGCTGGAAACTCAGCTTTGATTTTTTGGTG 5449 0.4148 MDHRPKSKDSLSYSTLFNLEPLMNFQLPQQDDDFDYYGNSSQDESRDSQGGGIANHSNGNVCERDVNLLKGRWSLNSDSDEKSGFYGTHMTEERYRSMLGEHIQKYKRRFKDTLTQNQAVIPLVKSSTGLKTRKSGNERRGGLHAAETTTEWMNDSSSQKPGNYRDADFLPQYGTADRIMYEPASLDIGDGIIYKIPPIYDKLAGALNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEAISHYESLQARLKVMSATNSPHKFSLKVSDDGLNSSVPEGAAGNIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKIWVNIVRRDIPKHHRNFGIYHRKQLVDAKRVRMKVSRSLKWTRTACIRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDTLSKVDEEENDEDALVDSSDARPEEEEDPEEAELKREALKAAQEAVSKQRMLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGDIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQDIIQGSETLSSSVDRGVSRESFEKHFNIFRPENVYRSVFSKDTCIKSGNFGFTHLMGVSPQEVTFLATGSFMERLLFSMVRWEQKFIDEAVDFLMETIDDDPACSYLEKGTVRTVTRMLLVPTRSEIQFLQKRLLTGPSHAPFEALVVPHQDRLFSNARLLHSAYTYIPQSRAPPIGAHCSDRNFNYKMIEELHDPWVKRLFVGFARTSDHNGPRKPDSPHHLIQEIDSELPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEDGDASMEDLTSSVAQGTSDYDLSMDPEGSKSSNKKRKAASDRPKNTQKMSEFSTMPMDGELDEVDPVGQKLKRPKRIKKNVNEKCEDAFTGTGTPVTEQTQFAPPRDFSAGGSKAESGQDC 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00140 1515 FunFam DNA helicase INO80-like protein 1165 1417 - -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 130 166 - -
Pste5g00140 1515 Pfam SNF2-related domain 594 881 IPR000330 GO:0005524|GO:0140658
Pste5g00140 1515 MobiDBLite consensus disorder prediction 1399 1421 - -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 1486 1500 - -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 1377 1515 - -
Pste5g00140 1515 Gene3D - 1164 1414 IPR027417 -
Pste5g00140 1515 FunFam Putative DNA helicase INO80 551 829 - -
Pste5g00140 1515 SMART ultradead3 575 770 IPR014001 -
Pste5g00140 1515 PANTHER HELICASE SRCAP-RELATED 551 1397 - -
Pste5g00140 1515 Coils Coil 416 455 - -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 1377 1398 - -
Pste5g00140 1515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 591 762 IPR014001 -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 33 60 - -
Pste5g00140 1515 Gene3D - 575 816 IPR038718 -
Pste5g00140 1515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1197 1381 IPR001650 -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 149 163 - -
Pste5g00140 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 807 IPR027417 -
Pste5g00140 1515 CDD SF2_C_SNF 1185 1317 - -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 478 508 - -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 1422 1438 - -
Pste5g00140 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 809 1373 IPR027417 -
Pste5g00140 1515 SMART helicmild6 1223 1306 IPR001650 -
Pste5g00140 1515 MobiDBLite consensus disorder prediction 478 505 - -
Pste5g00140 1515 Pfam Helicase conserved C-terminal domain 1197 1306 IPR001650 -
Pste5g00140 1515 Gene3D - 817 886 IPR027417 -
Pste5g00140 1515 Pfam DNA-binding domain 347 468 IPR020838 GO:0003677
Pste5g00140 1515 MobiDBLite consensus disorder prediction 30 60 - -
Pste5g00140 1515 ProSiteProfiles DBINO domain profile. 352 469 IPR020838 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00140 Pste-Chr5 1046841 1060255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00140 600 889 RAD5 or RAD16-like Gene Family AT5G43530 29.167 5.42e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste5g00140 SNF2_N 1.7e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00140 5 1046841 1060255 Pste5g00140 5 1046841 1060255 ECH