Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00062 ATGAAAAGAAGAAACCGGCGTGGTGGTGAGGTGAGTAACCGTCAGGAGGAGTACATAAGGAAAGTGAGTGGCATTGGGATAAGGTTTTTGATGAAGGGAGGAATGAAAGATTGTTCAGGTTTTGAAGAAGAGAAGAAGAAGAAGAAGAAGCGTAGTGCAATGTCAATGGATGATGAATGGAAAGGTAAGAGTAGTAAGAGAGCGTCGTCATCGTCGGAGCCGCCGCGTCCCTGCACGGAGTGCGGGAAGAAGTTCTGGTCGTGGAAGGCGCTGTTCGGCCACATGCGGTGCCATCCGGAGCGGCGATGGAGAGGCATCAATCCTCCTCCGAGCGTGAGGATGTCCGCGGAGGATCACGATGTGGCGGCGTGTTTGCTCCTTCTGGCCAACTCCTCCTCCTCCTCCTCGTCCTCTTTGGCCAGAAACGAAGAGGATCTTTGTTTGGAGTGTTCGAGTTGCAACAAGGTGTTCGGATCGCAGCAGGCTCTCCGGTGCCACCGCGCCAGCCACCGGAACGAGGAGAGCGGCGGTGATGGACACAAATGCAGCGTTTGTTTTAAGGTTTTCTCGAGTGGGCAGGCCCTCGGTGGCCACAAGAGGTGTCATTGGGATAATCACAAACCTGACTCCTCTGTGGATTTAAATTTCCCTCCTCCCCCCTCTGATTCTCTCACTCTTGATTTGAGGTTGGGACTCTAA 699 0.5336 MKRRNRRGGEVSNRQEEYIRKVSGIGIRFLMKGGMKDCSGFEEEKKKKKKRSAMSMDDEWKGKSSKRASSSSEPPRPCTECGKKFWSWKALFGHMRCHPERRWRGINPPPSVRMSAEDHDVAACLLLLANSSSSSSSSLARNEEDLCLECSSCNKVFGSQQALRCHRASHRNEESGGDGHKCSVCFKVFSSGQALGGHKRCHWDNHKPDSSVDLNFPPPPSDSLTLDLRLGL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00062 232 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 44 231 - -
Pste5g00062 232 MobiDBLite consensus disorder prediction 39 66 - -
Pste5g00062 232 Pfam C2H2-type zinc finger 149 171 - -
Pste5g00062 232 Pfam C2H2-type zinc finger 77 100 - -
Pste5g00062 232 Pfam C2H2-type zinc finger 180 204 - -
Pste5g00062 232 SMART c2h2final6 76 98 IPR013087 -
Pste5g00062 232 SMART c2h2final6 180 202 IPR013087 -
Pste5g00062 232 SMART c2h2final6 148 170 IPR013087 -
Pste5g00062 232 SUPERFAMILY beta-beta-alpha zinc fingers 73 102 IPR036236 -
Pste5g00062 232 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pste5g00062 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Pste5g00062 232 Gene3D Classic Zinc Finger 148 202 - -
Pste5g00062 232 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Pste5g00062 232 MobiDBLite consensus disorder prediction 39 79 - -
Pste5g00062 232 SUPERFAMILY beta-beta-alpha zinc fingers 149 202 IPR036236 -
Pste5g00062 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Pste5g00062 232 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Pste5g00062 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00062 Pste-Chr5 563814 564512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00062 76 232 C2H2 Transcription Factor Family AT4G35280 48.837 1.35e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g00062 zf-C2H2_6 2.4e-11 CL0361