LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00045	AATGCCGGAGCTTCGTAGTGGACCGCGACGACGTGGTGCTCCGGTCGGTCGTAAAAGCTCGGAAGCAGCGTCTCCGGCGGGTAGATACGTGAAGACTCGCGCTGCAGTCGCGAGGGAGGCGGCGAAGGCGAAGAAATTAGAAGAGGAGAAGCCGGTGATCGTTATATCCGATCACACAAAGAAGGACGTTGAAGGCGGCGCGATGGGCGACGAGAGTGGCGGCTTGAGTGCGAACAAGGGCGTTGCACAAGAAGATGACGCCAACACAGCTCCTTTTCCGGAGAGGGTTCAAGTAGGAGGCTCGCCCATCTATAAAGTGGAGAGAAAACTCGGCAAAGGTGGCTTTGGACAGGTTTTTGTTGGCCGTCGAGTCACTGGTGGTAACGACCGCACCACTGGTGCTGCTGCCACTGAGGTGGCTTTGAAATTTGAGCACAGGAATAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATTCCTAGAGTCCACTATAAAGGAAGACAGGGGGAGTACTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCGATGTCTGCAGAAATGGTTGCATGTATTGCTGTTGAGTCCCTGTCAATTCTGGAGAAGATGCATGCAAGAGGCTATGTGCATGGTGATGTAAAACCGGAGAATTTTTTACTAGGTCAACCGTCTACACCGCAAGAAAAGAAATTGTTTCTTGTAGACCTTGGATTAGCTACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAGTATGATCAACGTCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCCCATTTAGGAAGAACTGCTAGTAGAAGGGATGATCTCGAATCTCTTGCATATACACTCATCTTCCTTCATAGAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGGACATCTCCTGAGATGCTAAGCTGTTTCTGCCCTGCTCCTTTTAGACAGTTCCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCCAACTATTCCAGGCTAATATCTTTGTTTGATGGTATGCTTGGACCAAATCCTGCATTGAGGCCAATTAACACCGAGGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAGGACGATTCACAGCCCAAAAAGAAAGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGGCTTCCAATGAAGCAAAGGTATCATTACAATGTAGCCGATGCAAGATTAGCACAGCATGTAGAGAGAGGGATTGCGGATGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATCATGGATGCTGGAACTGGCTTTTCTAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGAAAAGAACTATTACATTACTTCCATTGCAGGGGCCAATAATGGGAGCTCTCTCGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGTGATTCTTTCCCGTTCAAATGGATAAACAAAAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTTTATCCTAGTGAGGGAATCCACAGACGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATACTGAGCATTCCTAGGCGCAGGCCAGGAGATGAAACCCAGGAAACTCTCCGTACTTCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACTTATACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGATTTCCTTTACAGGTCAAAGTATTTGGTTGTATGTGAAATGAAATTATATATTTTCTAATGCCCCAATCATGTATGACGTGGCAGAGAATTGTTGTATCATTGGCAGTTATATAGTATTATTCTCCCCACCCATTCTATTACAAGTTCCTTTGGGGGGTGGTGGATGTGACCGTTAATATATACCGCTTAGTTTTATGTTACTCCAATATGTATATGTAGGTTGTATCAAAATTTTTGTCTGACTCAAGATTGTTTCTGTGATCAGTCTAATAAAAACATTGTAAGGATGGCTTTGTGAATAAAGAGTCCAATACTTTTAATTTCCCTCATACTCACCAG	2341	0.4468	MPELRSGPRRRGAPVGRKSSEAASPAGRYVKTRAAVAREAAKAKKLEEEKPVIVISDHTKKDVEGGAMGDESGGLSANKGVAQEDDANTAPFPERVQVGGSPIYKVERKLGKGGFGQVFVGRRVTGGNDRTTGAAATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPRVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVACIAVESLSILEKMHARGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMGTSPEMLSCFCPAPFRQFLEIVVNMKFDEEPNYSRLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00045	666	Gene3D	Transferase(Phosphotransferase) domain 1	77	423	-	-
	Pste5g00045	666	ProSiteProfiles	Protein kinase domain profile.	104	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00045	666	Coils	Coil	29	49	-	-
	Pste5g00045	666	FunFam	casein kinase 1-like protein HD16	77	422	-	-
	Pste5g00045	666	ProSitePatterns	Protein kinases ATP-binding region signature.	110	142	IPR017441	GO:0005524
	Pste5g00045	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	230	242	IPR008271	GO:0004672\|GO:0006468
	Pste5g00045	666	SMART	serkin_6	104	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00045	666	Pfam	Protein kinase domain	104	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00045	666	PANTHER	CASEIN KINASE-RELATED	104	629	-	-
	Pste5g00045	666	SUPERFAMILY	Protein kinase-like (PK-like)	104	387	IPR011009	-
	Pste5g00045	666	CDD	STKc_CK1	104	379	-	-
	Pste5g00045	666	MobiDBLite	consensus disorder prediction	1	30	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00045	Pste-Chr5	413410	421917	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00045	91	261	EF-hand Containing Proteins	AT4G36070	27.869	2.61e-07	52.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Pste5g00045		Pkinase	1.9e-17	CL0016