Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00035 ACTAATTCTTGGTTTGTTGTGAGAGAATGTGGAAAGGGTAGTTGGAGACAGTTAGTGCTTAGTATTGAAGGCCTGCAAAGTGTAGAGTCCTTGAAAGTTGAAACATTCAAACCTCGGAACTCTTCTCCTCTTATTTGTCGCCTTATCTTGTTGTTTTCTTTTGATACCAATCATTTGTCTATTGCTTTGAGTGTTGTAGTTTCTATGCATAGCATTGGCAGGGTTACTTCTTGTTGGTGGCTGTTAGCTCCTCTGATTCTTCTGATGTCAGGACTTGGGAGTTGGGAGGGCACATAAATAAATGGCTTCATCTTTGGAGGAGCTTCTTGCTGAGGAGGGGTTCAAAGGAGTGACAAGGTCTAGATCCTCCTTCCACCATGCGCCTTCATGTGAGCCTCTTTACTCTTTGGAAGGGAGATTTTGTGTATCAACTGAAACAATTCCAACTCAGAGAACAAAGTCTGATGCCTCAAGATATCGTTTTAGTCATAATGCATCTTTGAGAGACAAAATGGATGAGATCACCGAGGTGATTGAGCAAGAAGCTAGCAGAGTTAAGGATACTTGTTCAAAACAAGTTTCTGCAAAAAGAGGGAAAAAGCAAAATTTCGATGCACTTGTGGAGGAGGAAGAATGGGGGAAAATTCCTGAAAAGCTGCATGGCAGAAGCTCCAGTATACTTATGCTTGGACACTCTAGTGAAACCAGAACTAATATAAAACCCCAGAAGGACTTACATACTAGATCTAATAGCAATCATGCTATGCAAGCTCCTTCCACTCCTGCTCTGGATGAAGTTGCTGTCCAAGCTGTAGTTTCCATTCTAAATGGCTATTTAAAGCGTTTTCCAAAAGATGAGGATTTTCGGTCAACCTTGCGTCACAAATGTTTCTCTTCCTTGAATTTTGTTGAACTGGAAGAAGAGAACATTACTGAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCGTTGAACAAACAGCTCAAGAACCTATATCTGCCACGTATCTGAAGAGAATCATGATGCAGCTTAGCATTATTACAGGTTTGAGTTTAAATGACTTCAAGTATGAGTGTACGTATGGAATCCCGAATTATAAACTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATACTTGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCACCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGAACTATATTGTTGCCTGAACTGTGGAACCATCTATTTTCTCCGTATTTTTCTCCTTTGAAGGCATGGTACAACAAGGAAGCAGAAGTACTAGTAAACACACCAAGTAAAACAAGAAAGCTAAAACTTATTCAGAACGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCACCCATTCCTTCAATTGCCATTCCATCAGTTTCTGTCATAGGAAGTCAAGAGGGAAGTTCACTTTTAGACTCTGGTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTTTATAATTCTATGTTTGGTAGCTTGAGTAAACCTGGAGTTTACCAAGTCAAAGATATTAAGGATGGTGGCAACTGTGTGAAAGGCTCATATGGTTCAACTATTGTTGAACAGACATTAACATCCGAGTCTGAAACTGTTGAATTCATGGATCAAGATATTGAAGATTTTGCTCAAGGTTTAGCAATTGATACAATCAAGCCTAAAGGAAATTCAATGACAGTTGCAGAAGAATGGCAGAAAAGAAATCTCATTGTGGACATTAATAACTCTTTCTCAAGGCAAACTAATTTGAACTGCCACAATATTGATGCTCTACCACATGAAAAAGCAAATGAACTTGCTACCAGAAAGGTGCGACCATCTCCAAATAAGATCAGTTCAGTTCTTGAAGGATCATATTTTCCAAGCATTCCCCAGGAATTTGTTTGTCCTCTTACTGGAAATCTCTTTGAGGAACCAGTCACCCTAGAGACTGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAACAGAACATGTCCGGTAACAGGAAATACTTTAGAATGTGTGGCCATGCCGTTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAATCAGAACGTTTTGATTACCTTCTTGATCTTGCTTCTCAAACGGTGGAGAATTCAGAGGAGCTTAAGATGAAAAATAGGGACGAGGCTGCTATTTTCAAGTTAGATGGTTTTCTCTCCTCTTTTAAAGAAGAAGATAAATCAACTTATGCTAAGCATCTCATCTCTTTAGGAGTTCTTCCCTTTCTTTTCAGGAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACATGTGGTCTCACTCTTGCTAAATTTTATTCAAGTGGACTCTGGTTGCATATATCAGATAGCAAGAAGTGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAAGAGGCTACACTAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTTCTTCCTTCATAAGTGATTTGGCGGGTGAACAAGTATTTAATATAATGCATATTCTGCTCATGCATCTCAAGAACTCTACTCCATTTGAAAAACCCCTAATTGCTGTCCTCTTATTACACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGCGGCAGTGAATGGCATTGCAGAGGCACTTGAAGGCAGCTTAAATGATGAAGAAGCAAGAAAAAGGTGTTGCAGAGCACTTCTAATCTTGTGTGGACATTTTTCTTCCACTACTAAGATTAGCATAATAAAACAAACAGGTTATAATAATGATAGCTTTGAAGTGATACATCCTGATTCAGGCCACAAAGAAGAGGAAGAAGAAAACAGGGGTGAAGAGTTGCAAAAGAAGCTGTTAGAGTCGTTGATTGGTGATGGAGACAGCCCATTTTTGAAGATCATGTGTAGATGTTTAGATTCTAAGCACCTAGATTTGGTGAAGGCGTGTCTAATAACACTAACATGGTTGAGCTCTTCACTATCTACAACATTTAGTGCTGGATTGCATCTTCCCTCATTCTTATCCATTATCTCTCAGTTGAAAGGAATCCTGGAAAATGAAGAACTTGAGCTCAAGGCTCTTGCTTCTTTGTCTTTGCTTAATTTCAGTCAAATATCAGGTTCAGGTTCGCCACCTTCTGCATTTTTGTTTTCACTTTGCTAA 3292 0.3919 MASSLEELLAEEGFKGVTRSRSSFHHAPSCEPLYSLEGRFCVSTETIPTQRTKSDASRYRFSHNASLRDKMDEITEVIEQEASRVKDTCSKQVSAKRGKKQNFDALVEEEEWGKIPEKLHGRSSSILMLGHSSETRTNIKPQKDLHTRSNSNHAMQAPSTPALDEVAVQAVVSILNGYLKRFPKDEDFRSTLRHKCFSSLNFVELEEENITETKVIRSLEQAIEAVEQTAQEPISATYLKRIMMQLSIITGLSLNDFKYECTYGIPNYKLSACAHLYLSVVYLMQKKNKVSAKHLLQVFCDSPFQARTILLPELWNHLFSPYFSPLKAWYNKEAEVLVNTPSKTRKLKLIQNVYNEHLDSGTHIFAVYYKDWLTEGVESPPIPSIAIPSVSVIGSQEGSSLLDSGSSIDPFSPQPMVSKKLYNSMFGSLSKPGVYQVKDIKDGGNCVKGSYGSTIVEQTLTSESETVEFMDQDIEDFAQGLAIDTIKPKGNSMTVAEEWQKRNLIVDINNSFSRQTNLNCHNIDALPHEKANELATRKVRPSPNKISSVLEGSYFPSIPQEFVCPLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLECVAMPFTNLILKRLIDNWKSERFDYLLDLASQTVENSEELKMKNRDEAAIFKLDGFLSSFKEEDKSTYAKHLISLGVLPFLFRRFEQGNVEEKSHVVSLLLNFIQVDSGCIYQIARSVNRKCLLELLHSKEATLTTNAILFLTELLSMKRRKDVSSFISDLAGEQVFNIMHILLMHLKNSTPFEKPLIAVLLLHFDLLVEPQKFSIYREAAVNGIAEALEGSLNDEEARKRCCRALLILCGHFSSTTKISIIKQTGYNNDSFEVIHPDSGHKEEEEENRGEELQKKLLESLIGDGDSPFLKIMCRCLDSKHLDLVKACLITLTWLSSSLSTTFSAGLHLPSFLSIISQLKGILENEELELKALASLSLLNFSQISGSGSPPSAFLFSLC 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00035 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 632 IPR013083 -
Pste5g00035 996 Gene3D - 650 988 IPR011989 -
Pste5g00035 996 ProSiteProfiles U-box domain profile. 557 632 IPR003613 GO:0004842|GO:0016567
Pste5g00035 996 Pfam U-box domain 558 628 IPR003613 GO:0004842|GO:0016567
Pste5g00035 996 PANTHER OS04G0584500 PROTEIN 544 983 - -
Pste5g00035 996 SMART Ubox_2 561 625 IPR003613 GO:0004842|GO:0016567
Pste5g00035 996 SUPERFAMILY RING/U-box 553 628 - -
Pste5g00035 996 Coils Coil 878 898 - -
Pste5g00035 996 SUPERFAMILY ARM repeat 672 984 IPR016024 -
Pste5g00035 996 Coils Coil 953 973 - -
Pste5g00035 996 Coils Coil 64 84 - -
Pste5g00035 996 CDD RING-Ubox_PUB 559 607 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00035 Pste-Chr5 353503 359827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00035 523 776 U-box Gene Family AT1G68940 28.070 7.04e-15 77.8