Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00026 CAACTTGTTAACTGCTCCTAACAAATCATCATCACAATTCACAATCATGGTTGCATTGTTCTCTCCAGTGTTTTCAACCAAGGGAAGGCTCTTAGAGGAGGAGCCATTAGGCTATAATAACCAGAACTGCTTCTACAAAGATGATGTCTCCTCTGATTACTCATTTCCCTATCAATTTTGTGCACAACAGACACAGATTGAGCTGGAAATTGAAAGGTCCACTGCACCATCCCCTGACCCTGCCGTGGTCAAAAAACTTAGCCACAATGCTAGTGAACGTGATCGTCGCAAGAAGGTTAATAACTTGGTCTCTTCTCTTCGTTCACTTCTTCCTGTGGCAGATCAAACGAAAAAAATGAGCATTCCTGCTACAGTTTCCCGAGTCCTAAAATACATACCTGAGTTACAACAAGAAGTGCAAGCACTAACTAAGAAAAAAGAGGAGCTTCTGTGCAAAATTTCTCAGCAATTGCAAGGAGATGCAGTGAACAAAGAATCTCAAAGGAAAATTTCCCACAACTCTTTTGTTGTTTCAACAAGTAGGCTCAGCGATTGTGAGGCTGTTGTTCACATTTCCTCTTATGAGGTCCACAAGGCGCCACTATCCGAGATCTTGTACTGTTTAGAAAATAATGGCCTTTTTCTGCTAAATGCTTCTTCCTCTGAAACCTTTGGAGGGAGAGTCTTCTACAACTTGCATTTCCAAGTGGATAAAACTCAGCGATTAGAGTCCGAGATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAATTAGGATTTTC 787 0.4104 MVALFSPVFSTKGRLLEEEPLGYNNQNCFYKDDVSSDYSFPYQFCAQQTQIELEIERSTAPSPDPAVVKKLSHNASERDRRKKVNNLVSSLRSLLPVADQTKKMSIPATVSRVLKYIPELQQEVQALTKKKEELLCKISQQLQGDAVNKESQRKISHNSFVVSTSRLSDCEAVVHISSYEVHKAPLSEILYCLENNGLFLLNASSSETFGGRVFYNLHFQVDKTQRLESEILTEKLLSIYEKQIRIF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00026 247 SMART finulus 74 126 IPR011598 GO:0046983
Pste5g00026 247 FunFam Transcription factor ORG2 64 150 - -
Pste5g00026 247 Coils Coil 117 137 - -
Pste5g00026 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 140 IPR036638 GO:0046983
Pste5g00026 247 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 67 238 - -
Pste5g00026 247 Pfam Helix-loop-helix DNA-binding domain 69 121 IPR011598 GO:0046983
Pste5g00026 247 Gene3D - 65 146 IPR036638 GO:0046983
Pste5g00026 247 CDD bHLH_AtORG2_like 69 142 - -
Pste5g00026 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Pste5g00026 247 MobiDBLite consensus disorder prediction 57 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00026 64 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 48.619 1.37e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g00026 HLH 2.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00026 5 286271 288554 Pste5g00026 5 286271 288554 ECH