Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00016 GAAAGGATGTGGAATTGTAATGGTGACCAAGCACAGTCCAGAGGCAGAGGCTTGTTTTGTTATCACTTATCAGGAGCAGTTTCGTGTAAGAACTGGACAGTTTTCACACAAACCAAAACTTAAACCGTAGTTAATATAACGTCAAAGTAAAAGAAAGGTTGAGTCTGGTTTACGCCAAATGTGTCGTCTTATTCTTCTCCTTGGTGTCAGACCCATTACTATAAAAGAAGCCACACTGCATCCTTCTCCATACTCTTTTGCTTTCTTTATCCAATAATAATAACTCCCTTTTCCCGTCTTTCCTTTGTTTATTATCCTTCTGGCTTGAATGGACTTAGTATAAGAAGTTCCCACGAGTGGCTTTGATATAAGAGAAGAATGGAGAAGGGGAATTTTATGAAGAATGGGGAGCTGAGATTGCCTCCGGGGTTCCGTTTCCACCCGACTGACGAAGAGTTGGTTGTGCAGTACTTAAAGCGTAAGGTCTTCTCCTGTCCTTTGCCAGCCTCTATCATTCCTGAAGTTGATGTTTGCAAATCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGGTACTTCTTCAGCACCAAAGAGGCCAAATATCCTAACGGGAATCGTTCCAACAGAGCAACTAATTCTGGTTATTGGAAGGCAACCGGGTTGGACAAGCAAATTGTAGCTTCTAAAGGGAACAACCAAGTTGTGGGGATGAAAAAGACACTTGTTTTCTACAGAGGAAAGCCACCTCATGGAGCCAGAACTGATTGGATTATGCATGAATATCGCCTCCTTAACTCTAACTCTCAGCAGGCTCCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTAAAGAGGAGAAATGGTGCCAAAAATCGGGAGGAAAAGGACATAGACACTTTGAGACCCAGCCGCAAGGTGAGGGTGGTTTTCTATGACTTCTTGGCGCAGAACAAGACTGATTCCTCATCCTCCGCCGCAAGTGGGATTACAGAGCTTTCCACCCACGAATCAGATGAACATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATTTTAGAAGAAAATCTTAACAAGCTTTCCCCTTTTCTAGTTGTTTCTCAAGCACCATATCGCATAACAAATCAAGCTTTGGATCTTTCTTTTCTTGTCTTTCCATGTAATTATCATCACCTGTTGAAAGGAAGTATCCCAAATGAGGCCGGCATTAAGGGTAGTCTGAAGAGTATGCTAGTTTGTAATGGACTTGTTATTTTTCCTTAATTCAATTTTTTTCTATCATCACCATCACCATGCATTTTATTTTTAGCTAAAAGGATGTGCTTTGACAGAGGAAAAGAGAAAGGTCCCTGGAAATCATAAGAAAAGAAGATGAACATATGCTTCTGCTCAATCTCTAAAAATAAAACACCGTTTTGAGGAGAGCAAACATAAAATAAGAACATAATCTTTGCGAGATCAGCATGACAGCATCGCATTAGTGAAAGAAGAGACTGCAATTGAAAAATGGTCATTCTCGGCGATCTAATTTTCAAGTTTTTTTTCCCCTTCGTGGCATTGGCCATAGCATATACAAATACAAAAACTGTTATTT 1598 0.408 MEKGNFMKNGELRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVASKGNNQVVGMKKTLVFYRGKPPHGARTDWIMHEYRLLNSNSQQAPMENWVLCRIFLKRRNGAKNREEKDIDTLRPSRKVRVVFYDFLAQNKTDSSSSAASGITELSTHESDEHEESSSSNTFPYFRRKS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00016 232 MobiDBLite consensus disorder prediction 194 208 - -
Pste5g00016 232 SUPERFAMILY NAC domain 10 160 IPR036093 GO:0003677|GO:0006355
Pste5g00016 232 Gene3D NAC domain 23 165 IPR036093 GO:0003677|GO:0006355
Pste5g00016 232 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 209 - -
Pste5g00016 232 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Pste5g00016 232 MobiDBLite consensus disorder prediction 194 232 - -
Pste5g00016 232 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00016 Pste-Chr5 153658 155410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00016 1 225 NAC Transcription Factor Family AT5G13180 58.661 1.52e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste5g00016 NAM 1.2e-36 No_clan