Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03453 AAATGCATGCTTCAAAATCTGTTGGGAAAAGGCATGAAGAATTGTTTCATAGATCTTCATCTAGCAATGAAGGGAAGGAAGTCTCTTTGAAACACAGGATGGTGAAACAAGCATTGCTGACCTTTAGGAACTTGTTTTGCACGTTAATGCAACAATATAAAGCAGACCAGCCAGGGAATTTGGTACCATCAAAAGTTGGGATGGAAGCAGCAATGTTGATGAAAAGGAAGCATCAATGGGAGAACTCTAAAAAGCATGTGGGACATGTTTTAGGAATTGAAGTTGGTGACCGTTTTCAATACAGGGCTGAACTCTATGTTATTGGCCTTCATCACCAATTTTCAAAAGGCATTGATTATGTGGGAACTGGTAGTGAATCGTTGGCCACAAGCATTGTTGTTACTGATCGCTACGATAATGTTAGGAAATCTGGTACTACCTTGATTTACATAGGTCATGGAGGAAATCCTAATGTCCAGAGGAATGTTGCAGTTCATGATCAAAAGATGGAAGCAGGAAATTTGGCTTTGAAGAATAGCATGGATGCTAAAAGTCCTGTGAGGGTTATATTGAAGGATGCTGGAAAATTTGATATTATGGATAATTGTCCATTTGTTTATGATGGGTTGTATTTAGTGGATAAGATGGTTCAAGAAAGAGGAAAATATGAAAAGCTTGTGTTCAAGTTTACATTGAATAGAATTTTAGGACAATCCCAAAGTTGTGTGTTTCTCAAGGATGATGTTATGGACAATGGTAACAATTTAAGGCAATTTGCAAGTTTTGCTCTAAGAAAGAGACTCAAGTCTAGGAGTTGTGTAGTCCAAAAAGATGTTGTTAGAATAAATGATATTTCAGAAGGAAAAGAAAAAATTTCTATTAGAGTAGTAACACCAGTGGAATGTGATCAGATAATTACACCCTTTAGATATGCAGTTGCTAACAATTATTTAGAGAGATTCAAGCTGCCTGTTCTATGTGGCTGTGATTGTGCAGATGGATGTGTGGACCCTGGAAAATGTGCTTGCATTGTTAAGAATGGTGGAAAACTGCCATATGAATGCAATAAAAGACTTGCTTCTATCATGGAATCATCCCTTATATATGAGTGTGACCCTTCTTGCAAGTGCCCCTCTTCTTGTATCAACCGAGTTAGTCAGCATGGTGTTCAGTTCCGACTAGAAATCTTCATAACAAAATTGAAAGGTTGGGGTGTTAGAACACGTTCATTCATTCCTTCTGGAAGCTTTGTATGTGAGTACATTGGAGAAGTCCATAACAAGAGAGAAACAAGATCCAATCTAGGTGCTAATGACTATATATTTCACATGGGTGTTGGAAAGGGCTTCATTGATGCAAAAAGCCTTGGAAATATTGGAAGATTTATAAATCATAGTTGTTCTCCAAATATCCATGTCAAAGATGTTATGTATGATCACAATGACAAGAATCTTCCACACAAAATGCTGTTTGCCGTTAAGGACATACCTCCTGGTAGGGAGCTGAGTTATGACTATAATTCCTCCAAGAGAAAGTTTATAGAATTTAGGAGTAATAGTTGCTACTGTGGATCACAGGAATGTCATGGACAGTTC 1595 0.3755 MHASKSVGKRHEELFHRSSSSNEGKEVSLKHRMVKQALLTFRNLFCTLMQQYKADQPGNLVPSKVGMEAAMLMKRKHQWENSKKHVGHVLGIEVGDRFQYRAELYVIGLHHQFSKGIDYVGTGSESLATSIVVTDRYDNVRKSGTTLIYIGHGGNPNVQRNVAVHDQKMEAGNLALKNSMDAKSPVRVILKDAGKFDIMDNCPFVYDGLYLVDKMVQERGKYEKLVFKFTLNRILGQSQSCVFLKDDVMDNGNNLRQFASFALRKRLKSRSCVVQKDVVRINDISEGKEKISIRVVTPVECDQIITPFRYAVANNYLERFKLPVLCGCDCADGCVDPGKCACIVKNGGKLPYECNKRLASIMESSLIYECDPSCKCPSSCINRVSQHGVQFRLEIFITKLKGWGVRTRSFIPSGSFVCEYIGEVHNKRETRSNLGANDYIFHMGVGKGFIDAKSLGNIGRFINHSCSPNIHVKDVMYDHNDKNLPHKMLFAVKDIPPGRELSYDYNSSKRKFIEFRSNSCYCGSQECHGQF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03453 531 SMART G9a_1 82 237 IPR003105 -
Pste4g03453 531 Gene3D - 66 252 IPR036987 -
Pste4g03453 531 SMART set_7 391 512 IPR001214 GO:0005515
Pste4g03453 531 SMART preset_2 281 375 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste4g03453 531 Pfam SAD/SRA domain 85 237 IPR003105 -
Pste4g03453 531 Pfam Pre-SET motif 284 383 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste4g03453 531 MobiDBLite consensus disorder prediction 1 27 - -
Pste4g03453 531 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 25 526 - -
Pste4g03453 531 Gene3D SET domain 258 515 IPR046341 -
Pste4g03453 531 ProSiteProfiles YDG domain profile. 87 233 IPR003105 -
Pste4g03453 531 ProSiteProfiles SET domain profile. 391 506 IPR001214 GO:0005515
Pste4g03453 531 ProSiteProfiles Pre-SET domain profile. 326 388 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste4g03453 531 SUPERFAMILY PUA domain-like 69 241 IPR015947 -
Pste4g03453 531 Pfam SET domain 402 506 IPR001214 GO:0005515
Pste4g03453 531 SUPERFAMILY SET domain 272 512 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03453 Pste-Chr4 28082593 28084264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03453 81 531 Su(var)3-9 homologs AT5G04940 36.768 1.93e-86 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pste4g03453 SAD_SRA 1.9e-40 CL0178