Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03435 ATGATCCCAAAGAAATTTGTGGACAAATATGGAGAAAGCTTACCAAATACTTTATGTCTTAAGACACCAAATGGGGCTGAGTGGAACTTGAATTTGAAAAAATGTGATGGTAAAATATGGTTTCAGAAAGGTTGGAAAGAATTTGCAGACTATCACTCTCTAGCTCATGGGCATATTTTGCTTTTCAAATGTGAAACAACTTACCATTTGAAGGTACAGGTGTTTGATTTGAGTGCCTTAGAAATAGACTACCCTTCAAAAGGAAAAGAAGGTAAAATTTCTTCCAATAATCAAGGAAACAAACCACTGGAGGGTCAAAAGAGAAAAGATAACTCCTCACTGAAATTTCTTCAAGCATATCAAATGAGAAGTGATAAGCATGTTAAGGTTGATGACAGCTTGATATTGCCAAAGAAGGTTCGGCCTCATAGTGACACAAATTGCAAAGAAGAAACAAACACCATTGCTAATCAAGTTACAGCTCTAGATAGAGCAAGTTCTTTCAAACCTTGTAATCCCTTCTTCATGGTTGTAATGCATCCATCATATGTGCTTTCTAATGATGGTAGTCCTCTGAGTTTACCATCTAAGTTTTGTAAGAGACACCTTGATTTTTGCAAGAAACAAAGAATTATTAAACTTCAGCTGTTAACTGGGAGAGTTTGGCCCGCAAAGTACACCATAAACAGTAAAGGCATTACTAGAATCACAAGTGGATGGAAGCCATTTGTCAAGCACAATAACTTGAAAGTTGGTGATGTATGCACCTTTGAACTCATTCATCCAACTAAACTAACCTTTCTTGTTCACATCTTCAGAGAATAGACAATTTGTATCGTTCAACATCTCAAGGTAAGATACTATATATGATTGATGTTTACTTTTCTATTTAGAAAAACTCCTTCGATGTATAATAAATATATTCC 926 0.3521 MIPKKFVDKYGESLPNTLCLKTPNGAEWNLNLKKCDGKIWFQKGWKEFADYHSLAHGHILLFKCETTYHLKVQVFDLSALEIDYPSKGKEGKISSNNQGNKPLEGQKRKDNSSLKFLQAYQMRSDKHVKVDDSLILPKKVRPHSDTNCKEETNTIANQVTALDRASSFKPCNPFFMVVMHPSYVLSNDGSPLSLPSKFCKRHLDFCKKQRIIKLQLLTGRVWPAKYTINSKGITRITSGWKPFVKHNNLKVGDVCTFELIHPTKLTFLVHIFRE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03435 274 PANTHER B3 DOMAIN-CONTAINING 1 269 - -
Pste4g03435 274 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Pste4g03435 274 Pfam B3 DNA binding domain 1 76 IPR003340 GO:0003677
Pste4g03435 274 Pfam B3 DNA binding domain 175 273 IPR003340 GO:0003677
Pste4g03435 274 ProSiteProfiles B3 DNA-binding domain profile. 177 274 IPR003340 GO:0003677
Pste4g03435 274 CDD B3_DNA 173 273 IPR003340 GO:0003677
Pste4g03435 274 MobiDBLite consensus disorder prediction 88 109 - -
Pste4g03435 274 Gene3D - 153 274 IPR015300 -
Pste4g03435 274 CDD B3_DNA 1 76 IPR003340 GO:0003677
Pste4g03435 274 SMART B3_2 1 78 IPR003340 GO:0003677
Pste4g03435 274 SMART B3_2 175 274 IPR003340 GO:0003677
Pste4g03435 274 SUPERFAMILY DNA-binding pseudobarrel domain 1 85 IPR015300 -
Pste4g03435 274 Gene3D - 1 79 IPR015300 -
Pste4g03435 274 SUPERFAMILY DNA-binding pseudobarrel domain 168 273 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03435 Pste-Chr4 27734020 27735236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03435 2 273 B3 DNA Binding Superfamily AT3G18990 30.530 7.66e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste4g03435 B3 1.6e-20 CL0405