Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03409 ATGTCAAATTTGAAGAGTGTTACACCACAACATCAAATGGAAATGGAAACCTCTGAGCTTTACCATTTTCTCACACATAGCAATGAGTCTTTCTTCAACTCTTCCTCATATGGTGTCCATGCTCCTTCATCTTCAACCATGCAACAACACACCTTCTCTAGTTCCTTTTCTTATTACCCTAATTCTTTGGAAGCTTATGATCATGTCCCTTCTCATGAAGACAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAACTCCCACCTCGACAAGCTTCGAACTCTTCTTCCTTGTAATTCCAAGACAGACAAAGCTTCGCTTCTTGCTAAGGTGGTCCAAAGGGTGAAGGAGTTGAAGCAGCAAACATCTGAAATAACCGAATTGGAACCCTACTTTCCTTCAGAGGCCGATGAGATTTCCGTTGTGTCTACCGGCGGTGACGAAAGCGGCGGTGACGGACAACTCATATTCAAGGCCTCGCTGTGCTGTGAGGACCGCTCCGACCTCATCCCCGACCTTATCGAAATTCTCAAGTCACTGCATTTGAAAACTCTCAGAGCTGAAATGGTCACTCTGGGAGGAAGAACACGTAACATTCTCATCGTGGCAACGGAAAAAGATCACAACAGTGTTGAATCGATTCAGTTTCTGCAGAACTCGTTGAATTCTCTATTGGAACGCTCCAACTCCAACGAGAGATCTAAACGACGTCGTGTCTTGGATCGAATGTTTGTCGTTTAA 768 0.4479 MSNLKSVTPQHQMEMETSELYHFLTHSNESFFNSSSYGVHAPSSSTMQQHTFSSSFSYYPNSLEAYDHVPSHEDKALAALRNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELEPYFPSEADEISVVSTGGDESGGDGQLIFKASLCCEDRSDLIPDLIEILKSLHLKTLRAEMVTLGGRTRNILIVATEKDHNSVESIQFLQNSLNSLLERSNSNERSKRRRVLDRMFVV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03409 255 CDD bHLH_AtAIG1_like 73 150 - -
Pste4g03409 255 SMART finulus 84 133 IPR011598 GO:0046983
Pste4g03409 255 PANTHER TRANSCRIPTION FACTOR BHLH30 48 250 IPR045847 GO:0003700|GO:0006355
Pste4g03409 255 FunFam transcription factor bHLH30 73 136 - -
Pste4g03409 255 Pfam Helix-loop-helix DNA-binding domain 82 127 IPR011598 GO:0046983
Pste4g03409 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 149 IPR036638 GO:0046983
Pste4g03409 255 Gene3D - 73 138 IPR036638 GO:0046983
Pste4g03409 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03409 Pste-Chr4 26180033 26182576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03409 13 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 59.740 1.06e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g03409 HLH 1.3e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g03409 4 26180033 26182576 Pste4g03409 4 26180033 26182576 ECH
Pste5g01252 5 8090017 8091503 Pste4g03409 4 26180033 26182576 PCT