Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03390 AAACCAACTACACTGGTGGGTGCAGTGGAAGTAGGAACAGTAGAGGAAAAAAAATGAAGCATGCGGTGCCAGCTAAGCTTGATGTCGGTTCCTCCTCAATAATCCTCACTCTCTGCCCCATGCCATCATCCATTGTCACTCCTCAATGCCCTTTTGATCCCTCTAAGCATCACATCCTTTTGGATCATCCCCTTATTCGTCATCATCATGCTGTTGTGACAGTTAAGGATAGTGCGGCGTGGGAAAGGAGCCTTGTGATTAGTTGTTTGAGACCAGAAGTGAACAAAAGGATGTCAAACAATAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTGCGGCTAGGACGGCGAGATGTGGTTTGTCCTAGCTGTAATGAGGGCTTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGGAATGGACAACAATGAAGAACGAGATCAAAGACTTGGCCTCATGGAAACCTTTTCTGCCTTCATGAGGCATCAAATGGCAGATAGGGGCCGAGGCCGCGATATCAGGGCGCAAACAGATTTAAACCCTGAACACAGTGCAGGCTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTCAGATTGGCAGGACATGGTGGATTTGAAGCTCTATTTAACGGGGCACCAGGAATCGGTCTGACACGAGGCAACACAGGTGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAACAACAGGCAAGGGCCTCCACCAGCAGCGCGATCCTCAATCAATGCAATGCCTACCATCAAGATCACACACCGGCATCTTCGATCTGATTCGCACTGTCCTGTGTGCAAAGATAAATTTGAACTGGGGTCTGAAGCAAGGCAAATGCCATGCAACCATTTGTACCACTCAGATTGTATTGTTCCATGGTTGGTCCAACACAACTCCTGCCCGGTTTGTCGACAAGAACTGCCACCACAGGGATTGAGTAGTAACCGTGGCACAAGTGGTAGAAGTAGAAGTAGTGGAAGGGCAAGTAGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCATTTTCATTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACCAGAAGCAGCACACCAGCACCAACTATCCCTGAAAATAGCCATCATCATCATCATCATCATCATTCAGGCTATTCTGGATGGCCATTTGAA 1229 0.4638 MKHAVPAKLDVGSSSIILTLCPMPSSIVTPQCPFDPSKHHILLDHPLIRHHHAVVTVKDSAAWERSLVISCLRPEVNKRMSNNRNTHWCYSCRRPVRLGRRDVVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRLGLMETFSAFMRHQMADRGRGRDIRAQTDLNPEHSAGFAPLLIFGGQIPFRLAGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPAARSSINAMPTIKITHRHLRSDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGTSGRSRSSGRASSSGRESQGRRNPFSFLWPFRSSHSSSNDEATRSSTPAPTIPENSHHHHHHHHSGYSGWPFE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03390 392 CDD RING-H2_RNF126-like 265 306 - -
Pste4g03390 392 MobiDBLite consensus disorder prediction 309 392 - -
Pste4g03390 392 SUPERFAMILY RING/U-box 245 312 - -
Pste4g03390 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 160 310 - -
Pste4g03390 392 Pfam Ring finger domain 264 306 IPR001841 -
Pste4g03390 392 FunFam E3 ubiquitin-protein ligase RING1-like 228 312 - -
Pste4g03390 392 MobiDBLite consensus disorder prediction 348 372 - -
Pste4g03390 392 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
Pste4g03390 392 MobiDBLite consensus disorder prediction 310 340 - -
Pste4g03390 392 Pfam zinc-ribbon 85 116 IPR039525 GO:0061630
Pste4g03390 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 312 IPR013083 -
Pste4g03390 392 SMART ring_2 265 305 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03390 Pste-Chr4 25881970 25884687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03390 200 319 C3H Transcription Factor Family AT5G01980 41.935 2.65e-26 108