LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g03361	ATGGCAACAGGATCAAAGTTTTTGGACAATGCAATTATAAGAGGCTCTCATTCTCTCAATACCTCTAATCATGTTCATGTGTTAAGAAGTGGTGTAAACTCATCAATAGCATCATCTCCTGAAAAGCTTCTTTCATATTCAAAATCTACTTCAATGAAAGAAGAGGCACCTTCTGCCACTTGGATTAGTAATATCCCTGCAAAGTTCCATAGCCATGAGGACATAAGAAATGGCAAAGAGAAAAACCAATCCAATTCTATCTTCCCAGCCTCAGATATAAAAAACAGCTCCACTCCTCTAAATCTTTTGGAAACTCTCCCACCATTAAATGTGGCACCATGTTTTGATGAGCCAGTGGCATCTTTAGCATCCTCTTCTGCCACACCCAATTTTCCAAACTTGACTTTGTTTTTGCAGGAATCTTCCATGGTGTACTCATCATCCTCAAATATCAAAGGTGGTGAAGTCATGTCCGCAACTTCAGACCCCACATTTCATGTTCCTCAGTTTGGCCAAAACCAGCATCAAACAGGTAGTGATGCACACAAAATGAACAAGAATCTTACAAATTCTTGGTCCAAGTCTTTCAATGAGAATTGGTTGAGTGCCACTAGGACTCAGCCTATGAAGTATGGTGGAAGAGGCAAGATGTTTAAAGGTGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCGAGAAATAGGACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAATTTCCCAGATCTCAAGCATGTAATTCAGGCCAATTCTCTGAATGGAACTACTGCTGCACTTGTGGAGGCTAAACTACAAGCAATATCACAAGGTGTTTCTTCTCACAGGAAGCCCACTGATTCACCAGCAGGGTCAAGCACCAAGCACACAGATGAGAATGGCAAATTGAAGAGTATAAGTGGCAAGGATTCATCCATAAGGATTGGAGCTGAGATAACTGAGAGAAGCAAAAGTACACACCATGATATATCAGAGGTGGAAACTTTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATAATTTGGGATGAACTTTTAGTCTCTAATTCATGA	1152	0.4123	MATGSKFLDNAIIRGSHSLNTSNHVHVLRSGVNSSIASSPEKLLSYSKSTSMKEEAPSATWISNIPAKFHSHEDIRNGKEKNQSNSIFPASDIKNSSTPLNLLETLPPLNVAPCFDEPVASLASSSATPNFPNLTLFLQESSMVYSSSSNIKGGEVMSATSDPTFHVPQFGQNQHQTGSDAHKMNKNLTNSWSKSFNENWLSATRTQPMKYGGRGKMFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHRKPTDSPAGSSTKHTDENGKLKSISGKDSSIRIGAEITERSKSTHHDISEVETFQLSRMPSLDMDIIWDELLVSNS	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g03361	383	Pfam	AP2 domain	218	266	IPR001471	GO:0003700\|GO:0006355
	Pste4g03361	383	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	76	378	-	-
	Pste4g03361	383	SMART	rav1_2	217	280	IPR001471	GO:0003700\|GO:0006355
	Pste4g03361	383	PRINTS	Ethylene responsive element binding protein signature	240	256	IPR001471	GO:0003700\|GO:0006355
	Pste4g03361	383	PRINTS	Ethylene responsive element binding protein signature	218	229	IPR001471	GO:0003700\|GO:0006355
	Pste4g03361	383	CDD	AP2	218	276	IPR001471	GO:0003700\|GO:0006355
	Pste4g03361	383	Gene3D	AP2/ERF domain	216	275	IPR036955	GO:0003700\|GO:0006355
	Pste4g03361	383	ProSiteProfiles	AP2/ERF domain profile.	217	274	IPR001471	GO:0003700\|GO:0006355
	Pste4g03361	383	FunFam	Ethylene-responsive transcription factor 2	216	275	-	-
	Pste4g03361	383	MobiDBLite	consensus disorder prediction	303	321	-	-
	Pste4g03361	383	MobiDBLite	consensus disorder prediction	303	332	-	-
	Pste4g03361	383	SUPERFAMILY	DNA-binding domain	217	275	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g03361	Pste-Chr4	25606300	25607451	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g03361	132	378	AP2-EREBP Transcription Factor Family	AT4G13620	46.275	4.36e-66	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste4g03361		AP2	2.5e-12	CL0081