Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03347 ATGTCTTTTCAAATTTTGCAGTTAATTTTGCTTGACTTGGAAATCATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTCGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCCGAGACTGCTGCAGCATATTTAGAGGAACAACAGCAACTTCAAATGCAGCAGTTGCAATTAATTCGACAAGCTCAAATGCAAAGAAGGGATTCTAATCATCCTCCACTTGCAGGTCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAGTCTACTGCCAGCGCTTTGGCTGCAAAAATGTATGAGGAGCGCATGAAACACTCTAACCCCATGGATACAGAGTCATCTCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACAGCAGCTTTGCAGCAAATGCAGGCTCGAACACAGCAAACCTCTGTATGTGCTTCCAATGCTCAGTCTTCATCTCAGGATATCAAAAGTGAGGTCAACATGGGCACCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTGCAAATGCAGGATTGAATCCAGGAGTTGGTAGCCTTACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAGCAACAACAACAGCAGCTCCTTGCACAGGTACAAGCACAAGGAAATATTGGCAATTCATCGGTTTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGACGGCCAATCAATTGTAAATGATGGATCAATAGGTTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATTCAACAATCCAGCTCCCAACAGCAACAGGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGCCCTACATCTTCAGGACCTGCCAACAGTACTGGTACAGGAAATACACTTGGTCCTTCTAATTCTCAGCCATCTACTCCATCAACTCAGACTCCCGGTGATGGAGTTGCTATGGCGGGTAACTTGCAAAATGTTACTGGTGTATCCAAAGGTTTGATAATGTATGGTACTGATGGAGCAGGTGGTCTTGCTTCTTCCACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCATTAGAGGATAATGTCGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGAAACCCTTCTGAGCCTGCCACAGATGCTTCAAAAGGCTTTTCCTTCAGCGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGGCATGACAAGAAGACACTGCAAACAGAAAGCACTCCGGAGGTTCACAGTCTTATTATTACTGATGTTCGCTTTAGACCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATACAACTGTGCGGCTATGGGATGCTTCAGATGTAAATTCCTTTTTACTACCAAGCTTTTCTTTACAGCATTATAGTGGTCATAATTCACATGTGGTGTCCCTTGATTTCCATCCAAAGAAGAATGACCTTTTCTGTTCTTGTGACGATAACAATGAGATTCGCTTCTGGGATATTAGTCAATATTCTTGCACTCGTGTATTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCTGCTGCAAGTAGCAGTGTTGTCTCTCTCTTTGATGTTGAGACTGACAGGCAGATGCACACATTTCAGGGACACTCAGCCGAGGTACACTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCCCTTGCCTCTGGGGAGTGTATTCATGAACTGAATTCCAGTGGAAACATGTACCATTCTTGTGTTTTTCACCCAAGTTACTCCAGTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACTTGGTTGAGAATAGATGTATGACAATTTCAGCTCACGAGTGTGTGATATCTGCTCTAGCACAGTCACCTGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAAGATTGATTATTTTATGGTTCAAACAACCATGTTATTTCTGCTACCTGTTACGTTCAAGGTAGAAGAACACGTAAACCCGAGTTGAAGAATTTACAAAGGTGGACCCAATTCGTCCTTCATTTTCTAGTGTGGACATTGTCTCTGTTCACGGGTAGTTTGGCTAATCTTTTTATTTATTCGCTCCTAAAAAGTTTAAATTAAAATCCCTTGGGTTCTTGCCAGATACTGTGCAAAAATTAGGGTCTTGTCATTGTTGTATTAAGCTCCTTCTCTTGTAATGTCCGAAATCTATGTTGTACAAGTTCATTGTCTTTTTACTGATTAGCAAATTACATCAATTAATCAGTAATGAATATATAAATTGATAATTTATTAACTGGGGGGTGAAGTTCTATGTATGATCTTTAATTCTTATTCCCTGTTAGATGCTGTAAAACCCTTGTTTGCTGAGTGTATGATCGACTCAATGAGCATATGATGGAC 2895 0.4166 MSFQILQLILLDLEIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEEQQQLQMQQLQLIRQAQMQRRDSNHPPLAGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTESSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQMQARTQQTSVCASNAQSSSQDIKSEVNMGTMQRSLPMDPSSIYGQGGMQSKPGIANAGLNPGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSSVYGDMDPQRLRGLARGSLNAKDGQSIVNDGSIGSPMQSTSSKINMPQIQQSSSQQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTQTPGDGVAMAGNLQNVTGVSKGLIMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEPATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKTLQTESTPEVHSLIITDVRFRPNSTQLATSSFDTTVRLWDASDVNSFLLPSFSLQHYSGHNSHVVSLDFHPKKNDLFCSCDDNNEIRFWDISQYSCTRVFKGGSTQVRFQPRLGHLLAAASSSVVSLFDVETDRQMHTFQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSSLLVIGGYQSLELWNLVENRCMTISAHECVISALAQSPVTGMVASASHDKSVKIWK 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03347 803 ProSiteProfiles LIS1 homology (LisH) motif profile. 23 55 IPR006594 GO:0005515
Pste4g03347 803 MobiDBLite consensus disorder prediction 342 434 - -
Pste4g03347 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 803 IPR001680 GO:0005515
Pste4g03347 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 649 IPR001680 GO:0005515
Pste4g03347 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 729 IPR001680 GO:0005515
Pste4g03347 803 SUPERFAMILY WD40 repeat-like 517 803 IPR036322 GO:0005515
Pste4g03347 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 642 - -
Pste4g03347 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 771 803 - -
Pste4g03347 803 Coils Coil 83 103 - -
Pste4g03347 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 590 - -
Pste4g03347 803 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 16 803 IPR044716 GO:0003714
Pste4g03347 803 Gene3D - 654 803 IPR015943 GO:0005515
Pste4g03347 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 590 IPR001680 GO:0005515
Pste4g03347 803 CDD WD40 519 803 - -
Pste4g03347 803 MobiDBLite consensus disorder prediction 493 512 - -
Pste4g03347 803 Pfam WD domain, G-beta repeat 557 590 IPR001680 GO:0005515
Pste4g03347 803 Pfam WD domain, G-beta repeat 685 720 IPR001680 GO:0005515
Pste4g03347 803 Pfam WD domain, G-beta repeat 770 803 IPR001680 GO:0005515
Pste4g03347 803 Pfam WD domain, G-beta repeat 528 549 IPR001680 GO:0005515
Pste4g03347 803 Pfam WD domain, G-beta repeat 604 640 IPR001680 GO:0005515
Pste4g03347 803 Gene3D - 597 653 IPR015943 GO:0005515
Pste4g03347 803 Gene3D - 512 596 IPR015943 GO:0005515
Pste4g03347 803 Pfam LisH 25 51 IPR006594 GO:0005515
Pste4g03347 803 SMART WD40_4 682 720 IPR001680 GO:0005515
Pste4g03347 803 SMART WD40_4 723 762 IPR001680 GO:0005515
Pste4g03347 803 SMART WD40_4 643 679 IPR001680 GO:0005515
Pste4g03347 803 SMART WD40_4 764 803 IPR001680 GO:0005515
Pste4g03347 803 SMART WD40_4 600 640 IPR001680 GO:0005515
Pste4g03347 803 SMART WD40_4 516 550 IPR001680 GO:0005515
Pste4g03347 803 SMART WD40_4 551 590 IPR001680 GO:0005515
Pste4g03347 803 SMART Lish 23 55 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03347 Pste-Chr4 25305790 25333005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03347 548 765 U-box Gene Family AT2G33340 28.261 9.36e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pste4g03347 WD40 0.0089 CL0186