Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03260 ACTGGACCAATGGCAGGCGGCCACTGAGCAGGTACGCCTATAAATCCCAAAGCATTGTTCTTTCCTGGCACAATCCAACCACCTAGAACCTTCTTCTACTACACTCTCTGCATCAAATAAACCAAAACGAAAACGAAAACAATTAACAATTATCTCTTCCCTCTGGACCAATTGAACCCTAAAGCCCAATTGATCTCTCCTGAATCTAATCCATGGCACGAATGGGTCCCGGGTTCCGATTTCACCCGACTGACGAAGAATTGGTGTCGTTCTACCTGAAACGCAAGATGACCGGAAAGTTGTCCCACTACGACCACATAGCAGTGGTGGACGTGTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTCTCCAAGCTGAGGACCAAGGACCTGGAATGGTACTTCTTCAGCGCCCTCGACCGCAAGTACGGAAACGGCTCCAGGACCAACCGCGCCACCGAAAAGGGCTACTGGAAGACCACCGGAAAAGACAGGCCGGTCAGTCACGACGACCGCACCGTCGGAATGAAGAAGACCCTCGTTTACCATATGGGTCGGGCCCCACAAGGTCGTCGCACCAATTGGGTCATGCACGAATATAAGATGGTCGATGCAGAATTGGCACGTGCCGGAACAGTCCTGGATGTGTATGTGGTGTGTAGGATTTTCGAGAAGAGTGGTGCTGGCCCCAAGAACGGGGCTAAGTATGGTGCTCCCTTGGACGATAAGGCGTGGGATGTGGACGACGAGGTAGAACAGGAAGAGGTGGCTCTGTTGCCGCCGCCTCCTTATGATGAAGTTTTCGATGCTGTCTCTACTGGGGCCTATGTTGAAACCAACGATCTTGACAAGGTTTGTATTCATTCTCTTCTATCCCAAATACTCCATATTGCGCTTCAAATCCTTTTCTCTTCGGATTAA 920 0.5109 MARMGPGFRFHPTDEELVSFYLKRKMTGKLSHYDHIAVVDVYKLEPWDLPPLSKLRTKDLEWYFFSALDRKYGNGSRTNRATEKGYWKTTGKDRPVSHDDRTVGMKKTLVYHMGRAPQGRRTNWVMHEYKMVDAELARAGTVLDVYVVCRIFEKSGAGPKNGAKYGAPLDDKAWDVDDEVEQEEVALLPPPPYDEVFDAVSTGAYVETNDLDKVCIHSLLSQILHIALQILFSSD 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03260 235 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Pste4g03260 235 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Pste4g03260 235 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Pste4g03260 235 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 172 - -
Pste4g03260 235 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Pste4g03260 235 FunFam Nac domain-containing protein 86 13 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03260 Pste-Chr4 24333013 24334098 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03260 1 177 NAC Transcription Factor Family AT5G04410 64.972 9.96e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste4g03260 NAM 4.2e-36 No_clan