Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03242 GTTTGTGTTGTGTTGTGTTCTATTTCCATTCTTTCACCAATTTTTTCTCTCTTCCTTTCTCAATTTTCCTCCATTCCCACGAAATCTAGGGTTTCCATTTCCCTCTTCATCCCAGGTACGTGCACTGCCTTTGATTTCCACGTCACCCTCCCATTTTCAGTGATCCCGATTTTGATAATTTGGCTTGATTTCGGCAATACCTTCTTTTGTGTTTTTGTTTTTTACACCTGAATTGTTCGTTCGTAGTTGTGTATGTTGATTTTGACTCTATCGTTTATCAGGTGGCATGTGTGGTGGGGCTTTGAATTTCGATTTAATTAGGGAAACCCTTTTTCTGTTTTTCCCCTGTTATTTTCCCATGGCCTCCACTCTCAGATTGGGGTTCCCTTTTTTCTTTTTCTTTTTCGTTTTCCTTTTCGGTTTCCGAGAGATTGAAATAATGGTGGTGGCTTAGCAACTGCTTTGCGTTTATGTCAGTCTTAGGAATGGAGTTTGTTCGAGGTGCATTTATGCTTTGTGGGTTCGTACATACAGGGATATAGATTGGTTGGGTTCCATTTAGTGTAGTGCTGAGGGGAGGGGTAGAGGAAGAAGGTGGGGATGACAGATTTTCAGCCACTACAGCAGAAACCTGAACCTGCTGATGCCCATGCCGAGTTTGAGCGGGGGCTAGAGGAGTTTATGCGAGGGCACTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCCTCCCGCGTGCCCGATGAAGAGGATGATGAAGGTGATCAACTGGTTCGGAGGAGGCGGAGGTCTGACCTTGAAGGGGATGATTTGGCAGAGTCCTCGGCTGCACGAAGGCGGCATTCGAGGATTTTGAGCAGGTGGGCTGCACGGCAGGCACAGGAGATGATAACCACTATTGAGAGAAGAAATCGAGAATCCGAGTTGATGGCGCTTGCTGGATTGCATACTGTGTCGATGTTGGATTCTTCTTTTCTTCGGGGCTCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAAGATGAACATTTGTTGAACCGGGCGCGTGAAAGGATGAGGGAAAGGTTGCGGCAGCAGAGGAATTCTGACTCTAATACTAATGTGTCCAGTACCATGTCCGACAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGAGGATGCAAGTGAGAGTGAAAATGATTATGGTACTTGGTCACATGATCAAATTGGATCGAGGAATGCACATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTCGAGAGGGAGAGAGTGAGACAAATTGTTCGAGGATGGATGGAAAGTGGCATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGGAGAGCAGAGTGGCTTGGAGAAACAGAGCGAGAGAGGGTAAGAATTGTTAGGGAATGGGTGCAAATGACTAGCCAGCACAGAAGTTCCCGTGGGAGCCGGAGGGATGCTCAAGTAAGTGAGGGTGCTCAAGCTGATCGAGTCCAAGATGTAGTAGCTGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTTAAGGTTGCGTGGCAGACAAGCCCTAGTTGATTTACTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTCCAGGGCTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCACCATCTATGGCTGCTAGTGAATTAGTTCAGCTAAGACAACGACACACGGTCTCTGGTATAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAGTCCTGATACCACATCAAATACTAACGGAAGTGAAACAAGAGGCGATGAGAACCAAGCAAACAGTCTGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAACTTGGAAACTGATATGCGTCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTAGCACAGGTGAGAGTATTAGTTGGCAAGAATCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCAACAGAGTCCTTTCAATCAGATGAGAGATGGAAGGGCAGTCGGTGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCTCGGGAAGCTCAAAGAATTTGGCATGATGATAACACAAGGGAAACTGCTGGTAATTGGTCCGAAGGGCCTTCTGGAGCTTCTAGGAATCGCCGTGGGGTTCCTTTTAGAAGATTCAATAGATTTCACCCACCTGATGATGATAATGTATATAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGGGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCTCCAATTGACTGGGATTTGCATCGAAACTTGCCAACACCAACTCCTGCCTCTCCAGAACGGGATCCAGAACAGCAAGGTGATGAACGTGATGAGGGTCAGCGTGAAACCATTAACAGACCTTCACTGGTGTTGCCTTCTCCACCAGTACCTCCACCACAACCTCTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGTATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAATTGCAGCGCTCAGTCAGACAGGAAGTATCTGCAGCGCTGAATCGCTCAGCTGGTGAAAATGGATCGAGTGCTGAGACATCTGATGATGGATCTAAATGGGGACATGTGAAAAAAGGAACATGCTGCGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAATTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAAAAAGGAAATTAAAAGGACATGGAGAAGACAGTCTGAGGGAGCTTATCTCAATTCTAAAGGTCTCGAGGTTCTTATTTATAAGTGTTCAGTAGATGCCTTTGTTTTTCTGATTATATATGGAACCTCCACGAATTGTATAATTGGATTAACAGAAGGCGCCGTTGATTCATCATTCTTACGTAAATAAATAGTTGCCCTGATTATTCTTTCCAAAAGTTTTACGTTGAAAATTCCAAGCTTGTATATGAATAAAAGCAGAATTCCC 3415 0.4559 MTDFQPLQQKPEPADAHAEFERGLEEFMRGHLDDCMSFASCSSSRVPDEEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRNSDSNTNVSSTMSDSRGSENQGSLEDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQHRSSRGSRRDAQVSEGAQADRVQDVVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGIREGFRSRLENIVRGQAGTSPDTTSNTNGSETRGDENQANSLVDGQQENYEQQQIRNLETDMRQLPNRTGTLESSTGESISWQESSNQGGNWQEQIAEEGGGNWQQSPFNQMRDGRAVGDWPQEPPRNLAGEDPHPREAQRIWHDDNTRETAGNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPEQQGDERDEGQRETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGSSAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03242 849 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 849 - -
Pste4g03242 849 SUPERFAMILY RING/U-box 796 842 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 434 467 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 667 682 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 1 22 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 40 78 - -
Pste4g03242 849 Pfam Zinc finger, C3HC4 type (RING finger) 794 841 - -
Pste4g03242 849 ProSiteProfiles Zinc finger RING-type profile. 797 836 IPR001841 -
Pste4g03242 849 MobiDBLite consensus disorder prediction 650 695 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 481 533 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 766 785 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 222 244 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 551 572 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 125 146 - -
Pste4g03242 849 CDD mRING-HC-C3HC5_NEU1 794 846 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 179 221 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 766 789 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 481 588 - -
Pste4g03242 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 774 847 IPR013083 -
Pste4g03242 849 MobiDBLite consensus disorder prediction 173 244 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 52 78 - -
Pste4g03242 849 Coils Coil 726 746 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 432 467 - -
Pste4g03242 849 MobiDBLite consensus disorder prediction 296 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03242 Pste-Chr4 24087372 24093573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03242 797 843 C3H Transcription Factor Family AT3G06140 42.553 1.71e-06 49.3