Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03240 AAACAAATGAACCCAACAGCTTCACTCTCTTCACTACTATTTCATCTCAATCAGTCCTTCCTCTAATTCCCTTCTCCTGAAGAGTTGTTATCATAGTTGTAGATAGGGACCAACACCAACCCTAAACACACTTTCACTTATTAACTCAACAAAAACATTTTTGTTGAGTTAAAGAAGATAACACACGCGTGCACATACACACGTGTTTGCAGTGGTGATAGTAGTAGCAGCAGAAGAAGGAGAAAAAAAGGTGAATTGTTACCATGTCTCTTGAAGAGTCTCTAAGATCTCTCTCCCTGGATTACCTCAATCTCCTCATCAACGGCCAGGCCTTCAGTGACGTCACCTTCCAGGTGGAGGGCCGGCTGGTCCACGCCCACCGCTGCATCCTGGCGGCTAGAAGCCTTTTCTTCAGGAAATTCTTCTGTGGTCCTGACCTACCGGCAGGGTTAGACTCTGTCGGCGGGTCAAGGACCGGCTCTGTTGGAAGCGTTTCACGCGCTTCCAGCGGAGTGATACCTGTGAACTCAGTGGGGTACGAGGTTTTCTTGCTCTTGCTGCAGTTCTTGTACAGTGGACAAGTGTCCATCGTGCCGCAGAAGCACGAGGCAAGGCCCAATTGCGGCGAGAGAGGGTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTCGACACCCTCGCTGCCGCTAGATACTTCGGGGTTGAACAGCTCGCATTACTCACTCAGAAACAGCTAGCAATAATGGTGGAGAAGGCCTCAATCGACGATGTGATGAAAGTTCTGATAGCATCTCGGAAGCAAGAGATGCAGGAGCTATGGAGCACGTGTTCTCATCTAGTGGCGAAATCCGGCCTCCCGCCGGAGGTTCTGGCGAAGCACCTCCCCATCGACGTGGTGGCCAAGATCGAAGAGCTCCGACTCAAATCCACGCTCGCGCGTCGCTCCCTGCTGACCCAGCACCACCCCCACGCGCCGCCGCCCGACGCCGAGGATCACAAAATGCGGCGGATGCGGCGCGCCTTGGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTAATGGGCGAGGGCCTCAACCTCGACGAAGCCCTCGCGCTGCACTACGCCGTCGAGAATTGCAGCCGCGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCGGCGGACGTGAATTTCCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCATGTCGCCGCGGAGATGGTATCGCCCGAGATGGTCGCCGTGTTGCTCGACCACCACGCCGACCCTAACGTCCGCACCGTCGACGGCGTCACGCCGCTTGACGTCCTCCGAACCCTAACCTCGGACTTCCTCTGCAAGGGCGCCGTACCAGGGCTCACTCACGTCGAACCCAACAAGCTCCGGCTGTGCCTGGAGCTTGTCCAGTCCGCGGCTCTTGTTCTGAGCCGCGAACAAGAAAACAACGACGACAACAACAATAACAATAATCCTTATCAATCCATAAGTGAAGACCGTTTGGACTCAAGGTTGGTGTACCTCAACCTAGGCGGCGGCGCGCCGTCGCAAATGAGTGACGATGATAGCGGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGTGGATGTGACCCTTCAATGTACCATCATCACTCTCATGACTTCTAGTTTCTC 1667 0.5591 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDLPAGLDSVGGSRTGSVGSVSRASSGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAIMVEKASIDDVMKVLIASRKQEMQELWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSTLARRSLLTQHHPHAPPPDAEDHKMRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDVLRTLTSDFLCKGAVPGLTHVEPNKLRLCLELVQSAALVLSREQENNDDNNNNNNPYQSISEDRLDSRLVYLNLGGGAPSQMSDDDSGQREAMNRHGSQGGGCDPSMYHHHSHDF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03240 465 SMART ANK_2a 311 340 IPR002110 GO:0005515
Pste4g03240 465 SMART ANK_2a 276 306 IPR002110 GO:0005515
Pste4g03240 465 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Pste4g03240 465 ProSiteProfiles Ankyrin repeat region circular profile. 311 341 - -
Pste4g03240 465 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 462 IPR044284 GO:0099402
Pste4g03240 465 Gene3D - 244 359 IPR036770 -
Pste4g03240 465 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Pste4g03240 465 SMART BTB_4 25 164 IPR000210 GO:0005515
Pste4g03240 465 Pfam BTB/POZ domain 16 113 IPR000210 GO:0005515
Pste4g03240 465 MobiDBLite consensus disorder prediction 423 465 - -
Pste4g03240 465 FunFam regulatory protein NPR5 isoform X2 242 359 - -
Pste4g03240 465 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Pste4g03240 465 Gene3D Potassium Channel Kv1.1; Chain A 3 197 IPR011333 -
Pste4g03240 465 FunFam regulatory protein NPR5 isoform X1 4 197 - -
Pste4g03240 465 MobiDBLite consensus disorder prediction 393 412 - -
Pste4g03240 465 SUPERFAMILY POZ domain 9 191 IPR011333 -
Pste4g03240 465 CDD BTB_POZ_NPR_plant 8 164 - -
Pste4g03240 465 ProSiteProfiles BTB domain profile. 25 111 IPR000210 GO:0005515
Pste4g03240 465 Pfam Domain of unknown function (DUF3420) 199 253 IPR024228 -
Pste4g03240 465 MobiDBLite consensus disorder prediction 231 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03240 Pste-Chr4 24076207 24080797 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pste4g03240 BTB 5.1e-15 CL0033