Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03205 AAAAATTAGGAAGTAGAGACGTAGAGGGAGGCCGTTCAAAACCCCAAACAAAACCCTCTAGGCTCCAACTCTAACACAGCGACGCCATTTCTCGTCACCCCTCTCTCTCCGGTACTCCGCCGTCATCTCCGTCAAACGAGACTGAAGCCGTGTCTGGAGACAAGATGGGTGAGAATCAAGAGAACGATGCCGCTCTTCGTCACAACAAACCTTCCACTGAACAGGAAATTTCTGATGAGCTTGACTTGAGAATGAAGAAGTATCTCAGAGGAGAAGGTGCTAATTTGGAGGTTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGTTAAGGAAGATTTATATGGAAAATCCGCAAAAGCTGCTGCCAATGCTGAGAAGTGGCTCATGCCCAGTGAAGGAGGTTATCTGGAGGCTGAAGGCATGGAGAAGACATGGAGGATCAAACAGGAAGCAATAGCTCGTGAAGTAGACATTTCAAGCTCTGGCAAACAATACGATATTATTTTACCAGAACTTGGTCCATATACTCTGGATTTTACATCAAGTGGCCGGTATATGTCTGTGGGTGGTCGTAAGGGTCATCTGGGAATTGTAAACATGATAAATCTGAGCCTAATCAAAGAGTTTCAGGTAAGGGAAACGGTGCGTGATGTTGTATTCTTGCATAATGAGCTATTTTTTGCTGCTGCTCAGAAAAAGTATACATATATCTATAATCGAGAAGGCACAGAGCTTCACTGCCTCAAGGAGCATGGTCCAGTGTTAAGGCTTCAGTTTCTGAAAAACCATTTTCTTTTGTCTTCAATCAACAAGTTTGGACAACTTCGCTATCAGGATGTTACAATGGGTTCCATGGTCGGTAATTTTCGAACTGGCTTAGGAAGCACGAATGTGATGCAAGCAAACCCCTTCAATGGGGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCAACCAGTGCTTCTCCTCTTGTCAAGATGCTATGTCATCATGGGCCTGTCTCAGCGCTGGCATTTCATGCAAATGGTCACTTGATGGCCACTGCGGGGAAAGATAAAAAAATTAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTTCAAACCTTACCAGGTCATGCAAATACTCTGGATTTTAGTCAAAAAGGCTTGCTTGCCTGCGGTAATGGTTCATTGATCCAGGTTCTGCGTGATGTTTCTGGTACGCAAAACTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGATTGGAAAATTAGTATTTCGACCATATGAAGATGTTCTAGGCATTGGTCATTCCATGGGCTGGTCTAGTATTCTTATTCCGGGAGCAGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTTGAAACTTCTAAACAGAGGGGAGAAAAGGAAATACGGTCTCTTCTTGATAAACTTCCACCTGAGACTATTATGCTGGATCCCAGCAAGATCGGTACAGTGAAACCAAAAAAAGAGAAACCAACAAAGCAAGAGCGGGAGGCTGAGATAGAAGCTGCCATAGAAGCTGCTAAGGGCATGAAGCTGAAGAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAAGGGTACAGAAAAAGCAAGAGGCAGTTGCTAGAGTGAAGAGGCCCTACATAGAGCAGAAAATTCAAGAAGAGGAAAACATATCACAAAAGAAGCAGAAAACTAGTGTGGGTGTTGAACTACCAAAATCCTTACAGCGGTTTGCTCGTAAAAAAGCATCTTCATGATTTAATTGTCCAATAGAGTTTTGCATTCGTCTTTATTTTTCTCCCCTGTTGATTTTAAGCTTCTTATTTGTGTTTTTTTGTTGCCTTTTAGAGTAAAGGCATGCCCAATAGACTTTTGTTTGTGTACACATTCTATTTTTTTTTATAAGCGGGACTTGGAAAGAGAAAGAGGGACACTAGATATTAATATTTAACTATTGTAATATTTTTTGAAAGGCATACTTATTGTAATGTGAAATTTTATCTGTTAATTTTTTTTAGCTTGTGTTTTGTGAAATTGATTTTCATTATCACCTC 2072 0.4151 MGENQENDAALRHNKPSTEQEISDELDLRMKKYLRGEGANLEVLKDKKLKGQLAVKEDLYGKSAKAAANAEKWLMPSEGGYLEAEGMEKTWRIKQEAIAREVDISSSGKQYDIILPELGPYTLDFTSSGRYMSVGGRKGHLGIVNMINLSLIKEFQVRETVRDVVFLHNELFFAAAQKKYTYIYNREGTELHCLKEHGPVLRLQFLKNHFLLSSINKFGQLRYQDVTMGSMVGNFRTGLGSTNVMQANPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHANGHLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSRYMTHSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRGEKEIRSLLDKLPPETIMLDPSKIGTVKPKKEKPTKQEREAEIEAAIEAAKGMKLKKKTKGRNKPGKRVQKKQEAVARVKRPYIEQKIQEEENISQKKQKTSVGVELPKSLQRFARKKASS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03205 536 SUPERFAMILY WD40 repeat-like 117 383 IPR036322 GO:0005515
Pste4g03205 536 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Pste4g03205 536 FunFam U3 small nucleolar RNA-associated protein 7 109 391 - -
Pste4g03205 536 MobiDBLite consensus disorder prediction 468 536 - -
Pste4g03205 536 PANTHER WD-REPEAT PROTEIN BING4 9 531 IPR040315 -
Pste4g03205 536 SMART WD40_4 148 185 IPR001680 GO:0005515
Pste4g03205 536 SMART WD40_4 312 346 IPR001680 GO:0005515
Pste4g03205 536 SMART WD40_4 270 309 IPR001680 GO:0005515
Pste4g03205 536 MobiDBLite consensus disorder prediction 434 454 - -
Pste4g03205 536 MobiDBLite consensus disorder prediction 440 454 - -
Pste4g03205 536 MobiDBLite consensus disorder prediction 1 24 - -
Pste4g03205 536 Gene3D - 115 390 IPR015943 GO:0005515
Pste4g03205 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
Pste4g03205 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 311 - -
Pste4g03205 536 SMART BING4CT_2 356 436 IPR012952 -
Pste4g03205 536 MobiDBLite consensus disorder prediction 483 512 - -
Pste4g03205 536 Pfam WD domain, G-beta repeat 278 309 IPR001680 GO:0005515
Pste4g03205 536 Pfam BING4CT (NUC141) domain 357 435 IPR012952 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03205 169 332 U-box Gene Family AT2G33340 25.862 1.18e-09 58.9