Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03179 TCGATTATTTTGGGTTTTCAGCTTCTAAACCCAGTCGAAGGAGAGAAAGCGAGCCATAAATTTGAAGTTCTGTTTGGTTCCATCTTTTGCGAACACCAACAGAGCGATTCTCCTTCGCTTCTTCCTTCCTCCGCCTCTGCTACTTCTGCAACCAAACAAACACGCCCTCCAACTTCTCTCTATCCCTTCACTACTCCACAACCCATTAACTTTTCAGGAATCATGGAAGTAGAGAAGGAAAATATCGCATCGACTATTAATGCAGAACCCTCTATATCTGCCTCTGATGGTCAAGATGCCGTTTCTGCTGTTAATGCATCTCTACCCCATCCAACACAACCTGTTATTCCACCAGTTATTGCACCTTCTGTTGTACCTGCTTTAGCTCCGATTCCTGCAATTCCTCCCCCTCACCCACTAGCACCGCTTCCAGTTCGGCCACCAGTCGTTAGACCACCTGTGCCTCAAAATGGCGAGGTTGGATCAAGTGACTCTGATTCGGACAATGATGACTCAAATGCAAGAATTAACCTGGGGCCTGGGGAGTATGAGATATCCGAAGAGAGTAGACTGGTGAGAGAGCGACAGGAAAAGGCAATGCAGGAACTCATGATGAAGAGGCGTGCTGTTGCTCTTGCTGTTCCTACGAATGATATGGCTGTGAGAGCTCGGCTTCGGCATCTTGGTGAGCCGATAACTTTGTTTGGTGAGAGGGAGATGGAGAGACGGGACAGGTTGCGAATGATTATGGCAAAGTTGGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGATGAAGAGGCTGCAGCCTCTGCTTCAAAAGACGAGGCAGAGGAAGAACTGCAATATCCTTTTTACACTGAAGGATCAAAGGCTCTCCTGGATGCCAGAATTTATATTGCTAAATATTCTTTGGCAAGGGCAGCACTACGGATTCAACGCGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATGGATTGGGCATTGAAGCAGGCTGGGAGTTTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGGCCACTTTCTGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAGCATTCTACCTTTAAGGGGCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTAATCATGATCATTTAGCAACTGCCTCCGCTGATCGAACAGCAAAGTATTGGAATAATCAAGGATCTCTTTTGAAAACATTTGAGGGTCATCTCGACCGTCTTGCACGCATTTCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGATGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTCCATCATGATGGATCATTAGCTGCATCTTGTGGACTAGATGCCCTGGCTCGTGTTTGGGATCTCCGAACTGGAAGGAGTATTCTTGCACTGGAAGGTCATGTCAAGCCAGTTCTTGGCATCAGTTTTTCACCTAATGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCTTTTTATACAATTCCTGCTCACTCTAATTTAATATCGCAAGTGAAATTTGAGCCACAGGAGGGTTACTTTTTGGTAACTGCCTCGTATGACATGACTGCTAAGGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACTTCAGTGGATGTTTTTGGAGATGGTGGGTATATCGTTACTGTCTCCCATGATCGCACCATAAAACTGTGGTCCAGCAATGCAACTGATGAACAAGCTATGGATGTTGACTGAGCTATTTTGATGGGATGCAATTTCTGAAAGGACTTTGGTGGTGCAAATTAGATTTATCATTTTTGTTAGAAACACCAACGTAGCATCACTTACTAGTTGCATAACTAATTACACAATCAAGTAACTGCAGTGTTGCTAATATCTTTCTCACTTGATGTACCTCGAGTAAATATGTTTGTGGTCCTGTATTTTCAGTCTAATTTGGTTGAAGTCCTACACTTTTAAATTCTCCATTTTGGCTCTAAAACTTTGAAAATCTTTTGAATTAATTCGGTCTGTCAGTATTAATGAAGTTTACATTGTGTTTTTGGC 2196 0.4399 SIILGFQLLNPVEGEKASHKFEVLFGSIFCEHQQSDSPSLLPSSASATSATKQTRPPTSLYPFTTPQPINFSGIMEVEKENIASTINAEPSISASDGQDAVSAVNASLPHPTQPVIPPVIAPSVVPALAPIPAIPPPHPLAPLPVRPPVVRPPVPQNGEVGSSDSDSDNDDSNARINLGPGEYEISEESRLVRERQEKAMQELMMKRRAVALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASASKDEAEEELQYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQRRRDDPDEDMDAEMDWALKQAGSLSLEFSEIGDDRPLSASKLWSMPKIKKHSTFKGHTERATDVAYSPNHDHLATASADRTAKYWNNQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVFGDGGYIVTVSHDRTIKLWSSNATDEQAMDVD 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 405 IPR001680 GO:0005515
Pste4g03179 627 Coils Coil 252 283 - -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 450 - -
Pste4g03179 627 SMART WD40_4 407 446 IPR001680 GO:0005515
Pste4g03179 627 SMART WD40_4 491 530 IPR001680 GO:0005515
Pste4g03179 627 SMART WD40_4 576 615 IPR001680 GO:0005515
Pste4g03179 627 SMART WD40_4 366 405 IPR001680 GO:0005515
Pste4g03179 627 SMART WD40_4 449 488 IPR001680 GO:0005515
Pste4g03179 627 SMART WD40_4 533 573 IPR001680 GO:0005515
Pste4g03179 627 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 458 627 - -
Pste4g03179 627 Pfam pre-mRNA processing factor 4 (PRP4) like 221 247 IPR014906 -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 455 IPR001680 GO:0005515
Pste4g03179 627 Gene3D - 332 557 IPR015943 GO:0005515
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 532 - -
Pste4g03179 627 MobiDBLite consensus disorder prediction 39 65 - -
Pste4g03179 627 ProSitePatterns Trp-Asp (WD) repeats signature. 475 489 IPR019775 -
Pste4g03179 627 SUPERFAMILY WD40 repeat-like 360 614 IPR036322 GO:0005515
Pste4g03179 627 ProSitePatterns Trp-Asp (WD) repeats signature. 517 531 IPR019775 -
Pste4g03179 627 SUPERFAMILY PRP4-like 199 254 IPR036285 -
Pste4g03179 627 Pfam WD domain, G-beta repeat 496 530 IPR001680 GO:0005515
Pste4g03179 627 Pfam WD domain, G-beta repeat 578 615 IPR001680 GO:0005515
Pste4g03179 627 Pfam WD domain, G-beta repeat 371 405 IPR001680 GO:0005515
Pste4g03179 627 Pfam WD domain, G-beta repeat 457 488 IPR001680 GO:0005515
Pste4g03179 627 Pfam WD domain, G-beta repeat 408 446 IPR001680 GO:0005515
Pste4g03179 627 CDD WD40 343 615 - -
Pste4g03179 627 Gene3D - 191 261 IPR036285 -
Pste4g03179 627 MobiDBLite consensus disorder prediction 144 182 - -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 405 - -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 624 IPR001680 GO:0005515
Pste4g03179 627 Gene3D - 558 625 IPR015943 GO:0005515
Pste4g03179 627 ProSitePatterns Trp-Asp (WD) repeats signature. 433 447 IPR019775 -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 497 IPR001680 GO:0005515
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 456 493 - -
Pste4g03179 627 PANTHER WD40 REPEAT PROTEIN 164 616 - -
Pste4g03179 627 SMART pr04_2 216 269 IPR014906 -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 582 IPR001680 GO:0005515
Pste4g03179 627 PRINTS G protein beta WD-40 repeat signature 433 447 IPR020472 -
Pste4g03179 627 PRINTS G protein beta WD-40 repeat signature 517 531 IPR020472 -
Pste4g03179 627 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 615 - -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 573 - -
Pste4g03179 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03179 418 614 U-box Gene Family AT2G33340 22.624 2.13e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g03179 4 23557627 23563542 Pste4g03179 4 23557627 23563542 ECH