Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03165 CAAACGGTTACCTCTCTCCGTTCATTAGCGCGCTATCTCAACGCAAAGACTCTCCCTTCTCACACCCAATTTCCTGACACTTCAAATTCGAAACACGCTGCGAAGCGCACTTATCACAACATGACACCCACCCTGCGCACGTTAGTCCCCTCCCGTGCTTCGCACACCGTCTTCCTCTACGACCCTTCTTATCCTACGCACCCTCTCCCCTCCCTCACTCCTTTTTCCGCTAAACCTTCTTCTTCTTCTTCCTCTTCTTCTCTCTCTCCCAAACCTCTTTTTCTCTTTCTTCTCTCTTTCGGCACCAAATTAGGGTTTCTTCCTTCGCCCTTCCGCATGGATCGCAAAAGGAAACGCAACCACTCCTTCTCCTACTCCACTCTCTTCAACCTCGAGCCGTTGATGAATTTTCAACTTCCGCATAAGGACGATGATTTTGATTATTATCAGAATAGTAGTACGGGTGATGAGAGCAGAGATAGCCAAGGTGGTAAGGTCAATCATCATAGTAATGGGGATGTGCATGCAAGGGAGGACGGTTTGTTGAGGAAGAGGGCGTGGTCTCAGAACTGTGAAAGTGATACTGATGATGAGGAACAGGGAAGATATTATGGGACATACATGACAAAGGAACGATATCGATCAATGCTTGGAGATCATGTCCAGAAATACAAAAGGAGGCGTAAGGATGCCGATGCCATGTCTAATCCTGCTCCTGCTCAGAATCAGGTTGCTGTTCCTCTTGTCACAAGTAACAACAATGGATTAAAAGTTCGAAAGTCAGGGAGTGATTACAAGGGAGCATTGCATGCTGCAGAAAATGCACCTGAAGGGGTTCATGATTCGGGTAATCAGAAGTCAGGAAACAACAGTCATACAGATTTCAAGCAGCGATTTGGAACTGATAGGATTGTGTATGAACCTGCTTTTTTGCACATTGGGGATGGTATCACTTACAAGATTCCTCCTGTTTACGATAAATTGGCGTCTATGCTGAACCTTCCAAACTTCTCAGATATCCATGTGGAGGAATTTTACTTAAAGGGCTCCTTGGATTTGGGGTCCTTGGCTGCAATGAGGGCTGCTGATAAAAGGTTTATGTCTAGAAACCGACCAGGCATGGGGGAACCTCTATCTGAATATGAATCGCTTCAGGCAAGAATAAAGGCCATGCCATCTTCTAATTCACCTAACTTCAGTTTGAAAGTGTCTGATGTTGGTTTGAATTCATCAATTCCGGAGGGTGCTGCTGGTAGCATAAAGAGATCTATTTTATCTGAGGGTGGTGTTTATTATGTTAAAGTTTTGGAAAAGGGTGACACATATGAGATAATTGAGCGAAGCCTACCAAAGAAGCATAAGGTAAATAAAGATGCTGCTTTGATAGAGAAGGAAGAAATGGATAGATTTGGAAAGATTTGGATAAACATTGTAAGAAGAGACATACCAAAGCATCATAGAAATTTTACTACTTTTCATCGAAAGCAACTCATTGATGCCAAGAAGTTGTCAGAATCTGTTAAATGGATTAAGGGTGCTAGCATTCGCTCCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAGCGAGTAGATAAGGAGATGGCTGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGAGGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGACAGGAGCATAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAGTGTACACTCTTCAGATGCTTTACCCTTGGTCGATGAAAAAACAAATGATCAAGATGCACTGTTTGACTCTTCAGATGCTGGGCATAATGAGGAGGAAGATCCCGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAAGCTGCTCAAGAAGCAGTCTCTAAACAGAGAAGGTTGACTAATGCTTTTGACAATGAATGCTTGAGTTTGCGCCAGGTCAGTGAAACTGATTCACTTACACAGCAAGTAGAAGGAGGAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTAGTATCCACAGTTCAGACACCGGAGTTATTTAAAGGCTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATCCAAGCTATGTCATTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGACCTTAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGATGATTCTAAGGAAAAGTATTAATCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTCATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTCCGCCGTGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAACCAGCATAAGGTGGAAGACACTTCTCAGCTTCAATTGTCGGAATCGCCTACTCCTGACTGGTACACCTGTTCAGAATAACATGGCAGAGTTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAATGGTTCTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAGCTTAGTAGATTGCATTCAATACTTAAACCTTTCATGCTGCGACGTGTTAAAAAAGATGTAATTTCTGAACTTACTAAGAAAACGGAGGTTATGTTGCATTGCAAATTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCTATTAAGAACAAAATATCTCTTGCTGGGTTGTTTGATAGTAATCGTGGGCATCTCAATGACAAGAAAGTTATGAATTTAATGAACATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAACGAGGGAAGCACATACTTTTACTTTGGAGAAGTTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGATATATACTATCCTGGTGGGCATAACCCCATATCATATGAGATACCTAAACTTGTCTATCAAGAGATTATGCAAAGTTCTAAAACCTTCAGTTCAGCTCTTGGTCATGGTGTTTGCAGAGAATCTTTTCAGAAATATTTTAATATTTTTAGACCTGAAAATATTCATCGGTCTATCTTCTCAGATGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACTCATTTGATGGATTTGTCTGCCCATGAGGTGGCATTTATTGCCACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGATCAGAAGTTCCTTGATGAAGTTTTAGACTTTCTTATACAGACCACAGCAGATGATCCTGAATGTAGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGCTATTGTTGCCATCAAGATATGAGGCCAAGTTTCTTCAGGAAAAGTTTGCAACTGGTCCCACCAATGCTCCTTTTGAGGCCTTGGTCAGCTCACATGAGGATAGGCTTTTATCAAATGCAAGGCTTCTTCACTCGGCATACACATATATCCCACCAACTAGAGCCCCCCCTATTTGTGCTCACTGCTCAGACAGTAGCTTCTCCTCTAAAATAACTGAAGAATTACACAATCCTTGGGTTAAGCGGTTGTTTTTGGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCTAATAATCTTCCTCATTTAATTCAAGAGATCGATTCTGAATTACCCATTGAACGGCCTGCACTTAAATTAACGCACAGTATTTTTGGCTCTTCACCACCTGTGCGGAATTTTGATCCAGCAAAGTTGCTAACTGACTCTAAGAAGCTTCAAACACTTGATATATTATTGAAGCGCTTACGGGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGGTCATCCACTATTCAGGATCGCAGAGACATGGTCAAAGATTTCCAGCAGAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGGGGATTGGGTATCAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCTACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACTAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAGAAAAGTACAGTACAGAATCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATATTTTAGCTCCTGAGGATGTTGTTTCTTTGCTTCTGGATGATGTTCAATTGCAACAGAAATTAAAGGAAATTCCTCTGCAGGTAAAGAGTAAGCAAAAGAAAAAACCAAAGAAGGCTATACGGATAAATGAGGAAGGTGATGCATCTCTGGAAGATATAATAAACTGTCAAGCCCAGGGAACTGAAGATTATGATATTTCCATGGATTCTGAAGGACCAAAGTCCAGTAATAAAAAGACGAAAAAAGTTTCTGACAGGAAAAAACCGAGGCCAAAGAATTCTCAGAAGATGAAAGGCAGTATGTCTGATAGATAACAAATGGGATGATGCCCCATCTAACATACTGATCTAGACAGAAATGTAGACCAAAGCGGACAGAGAACAAAAGTGAATGAAAACTTTGAAAGTCCACATTCCAGAGCTGACGCATTTTCCACCTCCACGTGACTTCA 4850 0.414 QTVTSLRSLARYLNAKTLPSHTQFPDTSNSKHAAKRTYHNMTPTLRTLVPSRASHTVFLYDPSYPTHPLPSLTPFSAKPSSSSSSSSLSPKPLFLFLLSFGTKLGFLPSPFRMDRKRKRNHSFSYSTLFNLEPLMNFQLPHKDDDFDYYQNSSTGDESRDSQGGKVNHHSNGDVHAREDGLLRKRAWSQNCESDTDDEEQGRYYGTYMTKERYRSMLGDHVQKYKRRRKDADAMSNPAPAQNQVAVPLVTSNNNGLKVRKSGSDYKGALHAAENAPEGVHDSGNQKSGNNSHTDFKQRFGTDRIVYEPAFLHIGDGITYKIPPVYDKLASMLNLPNFSDIHVEEFYLKGSLDLGSLAAMRAADKRFMSRNRPGMGEPLSEYESLQARIKAMPSSNSPNFSLKVSDVGLNSSIPEGAAGSIKRSILSEGGVYYVKVLEKGDTYEIIERSLPKKHKVNKDAALIEKEEMDRFGKIWINIVRRDIPKHHRNFTTFHRKQLIDAKKLSESVKWIKGASIRSRKLARDMLLFWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQEHRLNFLIQQTELYSHFMQNKSSVHSSDALPLVDEKTNDQDALFDSSDAGHNEEEDPEEAELKKEALKAAQEAVSKQRRLTNAFDNECLSLRQVSETDSLTQQVEGGSNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMSFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPDLKRLPYWGGLSERMILRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLSRLHSILKPFMLRRVKKDVISELTKKTEVMLHCKLSSRQQAFYQAIKNKISLAGLFDSNRGHLNDKKVMNLMNIVIQLRKVCNHPELFERNEGSTYFYFGEVPNSLPPPPFGELEDIYYPGGHNPISYEIPKLVYQEIMQSSKTFSSALGHGVCRESFQKYFNIFRPENIHRSIFSDDIIVKSGNFGFTHLMDLSAHEVAFIATGSFMERLLFSMMRWDQKFLDEVLDFLIQTTADDPECSYLEKGKVRAVSRMLLLPSRYEAKFLQEKFATGPTNAPFEALVSSHEDRLLSNARLLHSAYTYIPPTRAPPICAHCSDSSFSSKITEELHNPWVKRLFLGFARTSECNGPRKPNNLPHLIQEIDSELPIERPALKLTHSIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDILAPEDVVSLLLDDVQLQQKLKEIPLQVKSKQKKKPKKAIRINEEGDASLEDIINCQAQGTEDYDISMDSEGPKSSNKKTKKVSDRKKPRPKNSQKMKGSMSDR 1570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03165 1570 Gene3D - 691 933 IPR038718 -
Pste4g03165 1570 MobiDBLite consensus disorder prediction 604 625 - -
Pste4g03165 1570 Gene3D - 934 1003 IPR027417 -
Pste4g03165 1570 SMART helicmild6 1340 1423 IPR001650 -
Pste4g03165 1570 MobiDBLite consensus disorder prediction 161 180 - -
Pste4g03165 1570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 926 1488 IPR027417 -
Pste4g03165 1570 PANTHER HELICASE SRCAP-RELATED 207 650 - -
Pste4g03165 1570 MobiDBLite consensus disorder prediction 274 294 - -
Pste4g03165 1570 MobiDBLite consensus disorder prediction 280 294 - -
Pste4g03165 1570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 924 IPR027417 -
Pste4g03165 1570 Pfam SNF2-related domain 711 998 IPR000330 GO:0005524|GO:0140658
Pste4g03165 1570 SMART ultradead3 692 887 IPR014001 -
Pste4g03165 1570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1314 1498 IPR001650 -
Pste4g03165 1570 CDD SF2_C_SNF 1302 1434 - -
Pste4g03165 1570 Gene3D - 1261 1537 IPR027417 -
Pste4g03165 1570 ProSiteProfiles DBINO domain profile. 473 586 IPR020838 GO:0003677
Pste4g03165 1570 MobiDBLite consensus disorder prediction 146 180 - -
Pste4g03165 1570 FunFam DNA helicase INO80-like protein 1282 1533 - -
Pste4g03165 1570 Pfam Helicase conserved C-terminal domain 1313 1423 IPR001650 -
Pste4g03165 1570 MobiDBLite consensus disorder prediction 1546 1560 - -
Pste4g03165 1570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 708 879 IPR014001 -
Pste4g03165 1570 Pfam DNA-binding domain 468 585 IPR020838 GO:0003677
Pste4g03165 1570 Coils Coil 533 572 - -
Pste4g03165 1570 FunFam Putative DNA helicase INO80 668 946 - -
Pste4g03165 1570 MobiDBLite consensus disorder prediction 1527 1570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03165 Pste-Chr4 23181456 23201145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03165 749 997 RAD5 or RAD16-like Gene Family AT1G61140 23.226 3.35e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste4g03165 SNF2_N 1.2e-66 CL0023