Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03120 AATGAAATAAAAGTCTTCTCCTGAGTCCTTTTCTCTTTGTCATAGCAAAAGAACAGTAATCACAACTTGATTTAGATCTCAAAAATCTTGATCATCACCATCATTACCTTTAGATCTTTAACTCCTTCGTCACTCTCACTCTCACCTACTCTCACTCACCATGCCTTCTAGGGTTTTCATTCTCTGTGTCACTGGGACAATACAACAGTCCCCTTCTCACCCTCTCTCACCACCATTCTTTGATTCACCCTCCATCCTCATACCCACATAGAAAAGCATGCTTCTTTGGTGTCACTGCGTCAAACCCACTTCAGATTCTCCTCTGAAACCCACGGAGGGTGTTGTTGGCAGTGTTTGTTAGTGTTCACTGTTCAATTGGCGGTTTTTCTTCTGCAATCTGAAATTGGAGGGTGCTTTATCAATTTGGATTTCTTTTTCGCAAAATGATTTCTGCTGGGATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTCTTTGTCTGCACCAGGCTCATATGTGCTCGAATTCACTTGAATGCTTCACGGAGATCCTTTCCCATTGCCTCCAGATCCAATCTCAGCATGATGGAGCGGGGTTGCCATGGTCTTGAACGCGTAGCTGTAACCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCTTCCCTATTGTGGACACTCCTTCCATGTGATCTGCATAGACTTATGGCTGCAGCAGAATTCAACTTGTCCTGTTTGTAGAATATCATTGCGTGAATTTCCCGAGCGAAAGAGGTTAATGCAACCCATGTTCAGCTCAGCTTTGCAACCTAACTATGGTATGGAATCCTTTGACACTCACCATTATCACTGTATGGTGGCTGATAGTGGATTATCATCAAGAACCCCTGACAACCATGGGGTGAATACTGTAGAAGAGGATCGTTTTCCATCTGAGGGTGGTGGAGCAGTTGCTATGGACAATATCACCTGTTTAAGTGAGTGTGACTTCATTAAAGATGAAGGAAAAAAGCATGTAGAAAGCCCATCAAACTTCCAGATTTGATTGGTTCATGGAAATTGAAGATTCAAAATATGATACTGTCAGATAACAATTTGAGTATAAAGTTAATGTTCCAAAGTTGGAGTGAAAATGTGAAATGCATTATTAGCATGATGAAGGATGCTTAATATCTTTTACTGTATATATAGCAGAGAACATCCCCCAAACGCGGGCAGCCCTCTACTGTTTTACCCTCAATACTTGATAGTATTTGAATTCTCCTTCTCTCTCTCATCCCTTCCTAATTGTAATTGTTGTAAGTCTAGAATTAGTTGAAGACTTTTGTATTACACACTGCAATTAATGTATCTTGTCTTTTGGTCCAACAA 1459 0.4106 MISAGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRSFPIASRSNLSMMERGCHGLERVAVTKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDMLRILPYCGHSFHVICIDLWLQQNSTCPVCRISLREFPERKRLMQPMFSSALQPNYGMESFDTHHYHCMVADSGLSSRTPDNHGVNTVEEDRFPSEGGGAVAMDNITCLSECDFIKDEGKKHVESPSNFQI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03120 229 CDD RING-H2_EL5-like 86 129 - -
Pste4g03120 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Pste4g03120 229 SUPERFAMILY RING/U-box 81 135 - -
Pste4g03120 229 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Pste4g03120 229 Pfam Ring finger domain 86 129 IPR001841 -
Pste4g03120 229 PANTHER OS11G0150450 PROTEIN 1 185 - -
Pste4g03120 229 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03120 Pste-Chr4 22758030 22760980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03120 45 136 C3H Transcription Factor Family AT4G10150 42.391 1.71e-19 82.0