Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03119 CATTGCCACACATAGTAATCCATCTGTCACCTTTCCCTCAAAGTTCTAATTTTGGTCACTCTTTCCATCCTGGGGGGTCTCTGCAGAATCCCAATAATCCCTTCCAACAACAAAATAGTTCTGTTGTTTTTTTTGTGTGTACTGTGTTTCTTGCATATAAATAAAGGACCCTCTTTTGGGGTTCTTCTTTTCATGCCCATCTTTCCCCTCTTGTTGTGAATGCTGGTGGGTGCAGTGTTTGGTGTGGAAGGAGAATAAAGGAGGGAGCTTTGAGAGAGGGAAGAGGAAAAGGCATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAATGGGTTGTTGAAAAAGGCCAAGGAGTTATCTGTTCTCTGTGATGCTGAGGTTGCTGTCATAATTTTCTCTAGCACTGGCAAGCTTTATGAATTTTCTAACACAAGCATGGAGCATACCCTTTCAAGGTACAACAAAGGGGCAGAGTCGGATTCCACAGAGCAACCTATTGATGTGCCCCCAACAGATGTTATGGTTAATGAGCCTGATACTAACCTTTTGAAGGATGAAATAACAAAGCTTCGATCGGCATACTTAAGGATGACCGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAATTGCAGCACCTAGAAAGTCAACTCAGTGAAGGGATACTAGCTGTCAAAGACAAGAAGGAACAACTACTTGTAGAACAGCTTAGGAGGTCCAGGGTACAGGAGCAAAAGGCCATGCTGGAAAACGAAGTTTTGCACAAACAACTTGAGGAGATGCAAAATAAAACAAAGACACAGTTCCTTGAATTCAGTTCTTTGGATAGGACATTCTCAAACAATGGTTCAAAATCCCATTTCAATTGTGCTTCAGAGGAAAATGACCTTTCAGATACTTCCTTGCAGTTAGGGTTGTCAACAGATTATGGTCGCCAGAGGAAAGCATTGAAGATAGAACCCTGCAATGACTCAGGGAGTCAAGTGGCTTCACAGTGACATTTTTGAACTGAAAGGTTTATCTTTGGAGCTAGGGAAACATGGCCTAGCCCTTTATCTGGTTTAGCTTATAGAAATAGTTTTAGGCTAAATTAAATAAATTGATATTTAGCTCATAAGTTTTTGGCTTTCACCGGGTTTGATTGCTAAATTAGGTCTAAGTTTAGATACTAAATGACTCACCATGTTGAAATAGTCATTTAGTTCAACTAAACAGTTTTCAACTATATTAAGATGGTTGATTAGATAAAAAGGTGCTTAAGGTCTCCCTCCTTCCCTC 1317 0.4055 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYNKGAESDSTEQPIDVPPTDVMVNEPDTNLLKDEITKLRSAYLRMTGKELDGLSLKELQHLESQLSEGILAVKDKKEQLLVEQLRRSRVQEQKAMLENEVLHKQLEEMQNKTKTQFLEFSSLDRTFSNNGSKSHFNCASEENDLSDTSLQLGLSTDYGRQRKALKIEPCNDSGSQVASQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03119 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste4g03119 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste4g03119 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pste4g03119 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Pste4g03119 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste4g03119 247 Coils Coil 159 179 - -
Pste4g03119 247 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Pste4g03119 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste4g03119 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste4g03119 247 Pfam K-box region 97 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste4g03119 247 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Pste4g03119 247 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Pste4g03119 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste4g03119 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste4g03119 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03119 Pste-Chr4 22751040 22756003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03119 1 221 MADS-box Gene Family AT5G13790 48.214 1.44e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste4g03119 K-box 1.1e-12 No_clan