Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste4g03095 | ATGTGTATATATCATGTTTCCTGGAAAACAAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCGCAGGAGCTAGCTGGTGTACCAGTTGTCTTATCAGTTCAACCAGATAATAATTTTGAGTCTGAAAATAAGGATTATGCAGGTAGTAACTTGGAAAATAGTTGGAACATGTCCAATTCTCTAGAAGCAAGTCAGGAAGCCCCCTTGAAAACGAAGAAGCTTTTTGTGACAGGACTATCATTTTATACATCTGAGAAAACCTTACGCGCAGCATTTGAAGGCTTTGGAGAGTTAGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGATCCAAGGGTTATGCATTTATTGAATACACCACAGTGGAGGCTGCAAGTGCAGCACTTAAAGAGATGAATGGCAAGATTATCAATGGTTGGATGATAGTGGTAGATGTTGCCAAACCTAACCCACCAAGATACAACAGAAATCGTGCCGGATCATCAAGTTGACAAACGAGAAAAGCATTGCACTGAAGCCCCTTACGGGTGTGGTTATTGGCAAACAAATTGGAGTATTGTTATATCCACTTAATAGATATTTCTTGGAGAGACAAACATTCACCAAAATGGATTACAGCTACTGTTACAACAACTACAAACTGAAGCATTCCCCGGACACATGTTACTGATTTTTTTTATGAACTCACCTGATTTTAAAAGGACCTATGTGGACCTTTACGGACATTTTTATTCTATCCTTGAGTTTTTTCTTCTTTTTTTTTAAATTAATAGATAAGAATGACCAATGACCCAATTTGACTTGAAGAAGTAAGGAGAAACAAATGTTGGACCCATACTAACAATACAAAAGACAAAAAAAAA | 873 | 0.3666 | MCIYHVSWKTNFGFCCELDEDCAQELAGVPVVLSVQPDNNFESENKDYAGSNLENSWNMSNSLEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFIEYTTVEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAGSSS | 166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste4g03095 | 166 | Gene3D | - | 42 | 166 | IPR012677 | - | |
| Pste4g03095 | 166 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 74 | 152 | IPR000504 | GO:0003723 | |
| Pste4g03095 | 166 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 76 | 142 | IPR000504 | GO:0003723 | |
| Pste4g03095 | 166 | SUPERFAMILY | RNA-binding domain, RBD | 63 | 163 | IPR035979 | GO:0003676 | |
| Pste4g03095 | 166 | PANTHER | NUCLEOLAR PROTEIN 8 | 67 | 162 | - | - | |
| Pste4g03095 | 166 | SMART | rrm1_1 | 75 | 148 | IPR000504 | GO:0003723 | |
| Pste4g03095 | 166 | FunFam | Organelle RRM domain-containing protein 1, chloroplastic | 42 | 166 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste4g03095 | Pste-Chr4 | 22488834 | 22491204 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste4g03095 | 66 | 156 | C2H2 Transcription Factor Family | AT2G19380 | 32.967 | 7.76e-13 | 63.5 |