Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03081 TCTTGATCAAGAGAGAAAGGTGAGGAGGGGAAAAGCTCTTACATTTCTCATGAACTGTGGAGTCGTGTTGGGTTTCTATTGCTGGGATTGGGAGTTCTTAACTGCCCTTCTTCTCTTCTTGCCCTAATTTTCTTCTCAAATCAATTAACATCATCAACAAATATAGGGGAAACACCAAACCCCAAATTAGAATATAGATAATAACAAGTTCTATAGATGAGTATGGTAGAGATTACAAAAACGGAGGAAGAAAGTGACAAGAGGAAATTGTCTCCACCACCCTTTTTATTGAAAACCTATATGCTGGTTGAGGATCCTTCCACCAATGATGTTGTGTCATGGAATTGTGATGGAACAACGTTTGTGGTGTTGCAACCTGTGGAGTTTGCTCGTGATCTTCTCCCAACACTCTTCAAGCACAACAACTTCTCTAGCTTTGTTCGCCAACTCAATACATATGGATTTCGCAAAGTTGCAACAAGCCAATGGGAATTTTGCAATGACCGATTTAGAAAGGGTGAGAAGGAACTACTATGCAAGATTAAGCGTAAGAAAACATGGGTGACCAAACAACAACCCACCATTATTGCACCAATCAAAGTCACACCTCAAGACTCAGATGAAGAGCAAAGGTCCTTAATGTCAGCCTCTTCATCTTCAAGCTATGCTGTTCTTATGGATGAAAACAAAAGACTGAAGAAGGAGAATGGTGTGTTGAGTTCGGAGCTCACAACCATGAAGAGGAAGTGTAAGGAGTTGCTTGATTTGGTGGCTAAGTATTCATGTGCAAATGAAGAAGGGGTGGATGAGAGACCAATGTTGTTTAAGTTGAGATTGGAAGAAGTTCGTGTAGAAAGGGAGTTGAAAATTATAGAGGAGAGAGGTGACATGAGTGGAAGTACAAGTATTTTTTTATGAGTTTAATACTGATTTTTTAGCTTGTAAACATTGTGGTTCATATATAATAATAAGTTTG 976 0.3914 MSMVEITKTEEESDKRKLSPPPFLLKTYMLVEDPSTNDVVSWNCDGTTFVVLQPVEFARDLLPTLFKHNNFSSFVRQLNTYGFRKVATSQWEFCNDRFRKGEKELLCKIKRKKTWVTKQQPTIIAPIKVTPQDSDEEQRSLMSASSSSSYAVLMDENKRLKKENGVLSSELTTMKRKCKELLDLVAKYSCANEEGVDERPMLFKLRLEEVRVERELKIIEERGDMSGSTSIFL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03081 233 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g03081 233 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g03081 233 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g03081 233 FunFam Heat stress transcription factor B-4 15 113 - -
Pste4g03081 233 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 182 IPR027725 -
Pste4g03081 233 Gene3D - 15 114 IPR036388 -
Pste4g03081 233 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g03081 233 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g03081 233 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g03081 233 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03081 Pste-Chr4 22363301 22367107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03081 20 188 HSF AT2G41690 53.889 2.47e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste4g03081 HSF_DNA-bind 6.6e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g03081 4 22363301 22367107 Pste4g03081 4 22363301 22367107 ECH
Pste5g00205 5 1549809 1556193 Pste4g03081 4 22363301 22367107 PCT