Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03080 AAAAGATACTGTTTCTCCTGCATATCCTCCTGTGGGTGTTTAGAAGCTGATGAAGTTGATAATGAAGAGTCCATCTACCTCTCCCTTGCCCCTCCTACCCACCTCAAAACCAAGCCCTCTAACTCACAACACTCTTCTACTATGCCTCATCACCATCACCCCGCTGCTGTAACTGTTGCCCTCCACATTGGTCTTCCCTCCAACACGCCTTCCACTCCATATTGGATCCCTACTCCTCAACAAATCCTCCTTGGACCCACCCAATTTTCTTGCACTGTCTGTAACAAAACTTTTAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAGTATAGGAAAGGTGCGGAGTCACTGAGAGGGTCAAAAGGAAATTCTTCAATGATGAGGGTACCCTGCTATTGCTGTGAAGAGGGTTGCAAAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAAGATTTCAGGACCCTCCAGACACACTATAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGTCACAAGGCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCGTCTGTGGTTCTGATTTTAAGCACAAGAGATCCCTTAAGGATCATGTTCGTGCATTCGGTAATGGCCATGCTGCACACATCTTGAGTGAAGATGACAGTGAAGTGGTTCTTGGTACTTTCAAATGA 732 0.4645 KRYCFSCISSCGCLEADEVDNEESIYLSLAPPTHLKTKPSNSQHSSTMPHHHHPAAVTVALHIGLPSNTPSTPYWIPTPQQILLGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGAESLRGSKGNSSMMRVPCYCCEEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCHKAFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHAAHILSEDDSEVVLGTFK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03080 243 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Pste4g03080 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Pste4g03080 243 Gene3D Classic Zinc Finger 88 111 - -
Pste4g03080 243 SMART c2h2final6 137 169 IPR013087 -
Pste4g03080 243 SMART c2h2final6 174 194 IPR013087 -
Pste4g03080 243 SMART c2h2final6 89 111 IPR013087 -
Pste4g03080 243 FunFam Zinc finger protein WIP2 143 225 - -
Pste4g03080 243 MobiDBLite consensus disorder prediction 34 49 - -
Pste4g03080 243 Gene3D Classic Zinc Finger 112 199 - -
Pste4g03080 243 MobiDBLite consensus disorder prediction 32 51 - -
Pste4g03080 243 PANTHER ZINC FINGER PROTEIN WIP2 22 230 IPR043584 GO:0003700|GO:0010468
Pste4g03080 243 SUPERFAMILY beta-beta-alpha zinc fingers 89 194 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03080 Pste-Chr4 22352520 22353644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03080 21 232 C2H2 Transcription Factor Family AT1G13290 67.797 1.76e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g03080 zf-C2H2_6 0.00054 CL0361