Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03064 ATGTTGTATTCAGTGATGAGAATTCTTTGTTTGTTACATTTTCTGTTAAGTTTGTGTTTGTCAAAATCTCTGCATGTGGGTGCTAAGTTGAAGGAGCAAATGATACTACTTACCTTCAACCAAGAGGTTGGAGTCCCTGAATGGAATGGCAGCGACCCTGATTACTGCTCATGGAAAGGTGTCACCTGTGGCCATCACTCACATGTGGAGAAGCTCACTCTCTCTAATCAGAATCTTGGAGGTAATGTAAGTTCAATTTCCAGGCTCAAAGCTTTAAAGTGGCTTGACCTTTCTAATAATAACTTTCATGGGGTGATTCCTCCTGCTTTTGAAAGTTTATCTCATCTTGAATTTCTAGACTTGTCTTCAAACAAGTTTGAAGATTCAATTCCTCTAGAATTGGGTGGTCTCAGGAGCCTTAAAATATTAAACCTTTCCAATAACATGCTGGTGGGAGAGATACCAAAGGAATTTCAAGGCCTTGAGAGTTTACAGGAATTTCAAGTTTTCAACAATCACTTGAGTGGTTTGATACCAGCTTGGGTGAGGAATTGGACCAATCTGAGAGTTTTTTCTGCTTATGAGAATGATTTCAGTGGAAGGATTCCAGGTACACTTGGATTCATTTCTGAGCTTAAAATACTTAACCTGCATTCAAACCACCTTGAAGGCCCTATACCAGGTAGTATTTTTTCTTCAGGGAAGCTACAAGTTCTGATCCTCTCTCAGAACAGTTTGAGTGGTGAGCTTCCTGAGGAAATTGGGGATTGTCAAACCCTTTACAGTGTTCGAATTGGCAACAACAACCTGGTAGGTAATATTCCTAAGAGTGTTGGAAATATTACTAACCTTGCCTACTTTGAAGCTGACAATAATAATCTTTATGGTGAGTTGGTATCAGAATTTTCTTTGTGTTCTAATCTCATGTTCTTGAACTTGGCTTCAAATGGATTCACTGGAACAATACCACCAGAATTTGGACAGCTTATGAACCTGCAGGTGTTAATGCTCTCCCGAAATCGCCTTTTTGGTTACATTCCAGAATCAATTTTGCAGTGCAAGAATCTTAAAATGCTTGACTTAAGCAATAACAGGTTCAACGGGACAATACCAAAGGAAATCTGTAGCATCTCTAAGTTGCAGAAGTTGCGGTTGTGTCATAATTCCATAAGAGGAGTGATCCCTCATGAAATTGGAAGGTGTAGGAAACTTGTTGAATTGCAATTGAGCAGTAACAATTTGACTGGAACTATTCCTTCTGAGATTGGTTACATGTATAACTTGGAGATAACTTTGAATTTGAGCTATAACCATCTACATGGACCATTGCCCCAACAATTAGGAAGACTAATCAAACTTAGTTCTCTGGATGTTTCCAACAATCATCTCTCAGGTAATATCCCAAGTGCATTTAACAGAATGTCGAACTTGATTGATGTTAACATTTCAAATAATCAGCTCAGTGGTCCAATTCCACGGTTTGGACCATTCCTGAAGAGTCCTGTTTCAAGTTATTTAGGCAACAAAGGGCTTTGTGGGGAGCTATTGAACATTACATGTGAAGATCAACATCATTATGTTGAGCTCCAGGAATACCAATACTCCAGTGGAATTTCTTATGAAGACATAGTAAGTCTACTTCCGCTATTTTTAGCAGCTTTGCTGGTATTAACTGTAGTTGTCTTTATGATCAGAAAGTGGAAAGAAGTTTTAGCAAATGATGCTGTTGTAGAAGGTGATGAAACCAATACCAAACCATATATAATATCAGGAAGGGTTTTTGTTAATGAGCTAAGACAAGAAGTATACCTTGATGCTGTTGTTCAAGCAACTCTGAATGAGTCTAACAAGCTCAGCAGTGGCACTTTTGGTGCAGTTTACAAGGCATTAATGCCCTCTGGAATACTCTTACTTGTAAGGAAACTGATCTCTATGGACATGACGATAATGCACTACCAAAGCAAGATAGCCATAGAGCTCCAATGGTTGCACAAACTATGTCATGAAAATGTAATGAAACCTATTGGATATGTTATTTGCAATGATGTTACTCTTCTCATTTATCAATATCTTCCCAACGGAACATTGGCTCAGCTTCTTCATGAATCCATAATGCAATCTGGATATCAAACTGATTGGCCTGCAAGACTATCTATTGCAATAGGAGTGGCAAAAGGTTTGGCTTTCCTTCATCACTTGGTAATCATCCACCTTGACATTTCTTCTAGCAACATTCTTCTGGATGCAAGTTTTAAGCCATTGATTGGGGGCATTGAAATATCAAAACTTCTGGATCCAACTATAGTCACTGGTAGTATTATCCCACATGTTGGTTCCTTTGGTTACATTCCACCAGAATATGCATATACAATGCAAGCCACAGCACCTGGAAATGTTTATAGCTTTGGTGTAATTCTTCTAGAGATCCTAACAACTAGAAGACCAGTTAGTGAGGATTTTGGTGAAGGAGTGGATTTGGTGAGGTGGGTTCATGGAGCTGCAGCAAGAGGTGAAACTCCAGGGAAAATACTTGATGCAAAGCTTAGCTCAGTTTCCAATGGTTGGAAGAAACAAATGCTTGCTACTCTAAAAGTGGCTTTGCAATGCACTGATCATAGGCCAGCAAAACGACCAAAAATGATGAATGTAGTGAGAATGCTTCGAGAAATAAGTAACAACTGA 2682 0.3893 MLYSVMRILCLLHFLLSLCLSKSLHVGAKLKEQMILLTFNQEVGVPEWNGSDPDYCSWKGVTCGHHSHVEKLTLSNQNLGGNVSSISRLKALKWLDLSNNNFHGVIPPAFESLSHLEFLDLSSNKFEDSIPLELGGLRSLKILNLSNNMLVGEIPKEFQGLESLQEFQVFNNHLSGLIPAWVRNWTNLRVFSAYENDFSGRIPGTLGFISELKILNLHSNHLEGPIPGSIFSSGKLQVLILSQNSLSGELPEEIGDCQTLYSVRIGNNNLVGNIPKSVGNITNLAYFEADNNNLYGELVSEFSLCSNLMFLNLASNGFTGTIPPEFGQLMNLQVLMLSRNRLFGYIPESILQCKNLKMLDLSNNRFNGTIPKEICSISKLQKLRLCHNSIRGVIPHEIGRCRKLVELQLSSNNLTGTIPSEIGYMYNLEITLNLSYNHLHGPLPQQLGRLIKLSSLDVSNNHLSGNIPSAFNRMSNLIDVNISNNQLSGPIPRFGPFLKSPVSSYLGNKGLCGELLNITCEDQHHYVELQEYQYSSGISYEDIVSLLPLFLAALLVLTVVVFMIRKWKEVLANDAVVEGDETNTKPYIISGRVFVNELRQEVYLDAVVQATLNESNKLSSGTFGAVYKALMPSGILLLVRKLISMDMTIMHYQSKIAIELQWLHKLCHENVMKPIGYVICNDVTLLIYQYLPNGTLAQLLHESIMQSGYQTDWPARLSIAIGVAKGLAFLHHLVIIHLDISSSNILLDASFKPLIGGIEISKLLDPTIVTGSIIPHVGSFGYIPPEYAYTMQATAPGNVYSFGVILLEILTTRRPVSEDFGEGVDLVRWVHGAAARGETPGKILDAKLSSVSNGWKKQMLATLKVALQCTDHRPAKRPKMMNVVRMLREISNN 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03064 893 Gene3D Ribonuclease Inhibitor 27 175 IPR032675 -
Pste4g03064 893 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 285 892 - -
Pste4g03064 893 Gene3D Ribonuclease Inhibitor 232 523 IPR032675 -
Pste4g03064 893 Pfam Leucine rich repeat N-terminal domain 47 63 IPR013210 -
Pste4g03064 893 SMART LRR_typ_2 377 401 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 161 184 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 329 353 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 450 473 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 89 112 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 113 136 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 137 160 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 234 257 IPR003591 -
Pste4g03064 893 SMART LRR_typ_2 209 233 IPR003591 -
Pste4g03064 893 ProSiteProfiles Protein kinase domain profile. 612 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g03064 893 Pfam Leucine rich repeat 379 439 IPR001611 GO:0005515
Pste4g03064 893 Pfam Leucine rich repeat 68 126 IPR001611 GO:0005515
Pste4g03064 893 Pfam Leucine rich repeat 306 366 IPR001611 GO:0005515
Pste4g03064 893 Gene3D Transferase(Phosphotransferase) domain 1 691 893 - -
Pste4g03064 893 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515
Pste4g03064 893 Pfam Protein kinase domain 614 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g03064 893 SUPERFAMILY L domain-like 52 232 - -
Pste4g03064 893 FunFam Nuclear pore complex protein NUP107 27 180 - -
Pste4g03064 893 SUPERFAMILY Protein kinase-like (PK-like) 613 890 IPR011009 -
Pste4g03064 893 ProSitePatterns Tyrosine protein kinases specific active-site signature. 735 747 IPR008266 GO:0004672|GO:0006468
Pste4g03064 893 Gene3D Ribonuclease Inhibitor 176 231 IPR032675 -
Pste4g03064 893 Gene3D Phosphorylase Kinase; domain 1 581 690 - -
Pste4g03064 893 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 691 893 - -
Pste4g03064 893 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 229 524 - -
Pste4g03064 893 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 582 690 - -
Pste4g03064 893 SUPERFAMILY RNI-like 171 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03064 Pste-Chr4 22152737 22155786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03064 1 890 Receptor kinase-like Gene Family AT2G41820 58.725 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste4g03064 Pkinase 4.1e-25 CL0016