LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g03063	AATAATTTCTCATAACCTTCAACTTTTCATTAAAGAATTATTTAACCATCATTTCCTCCCATAGACAATCAAAGTAAACCATGACTCTCTTATCTTCTTTCTCTTATGTGTCTATCATTTTTCTGCTATTCCTACAAACTTGTTCAGCCAAGCATCACCCATCCTGTGCACCATCTTCATGCGGCAAAATTCACAACATAACATACCCATTCAGACTAAAAGGAGACCCACAGGGCTGTGGCCTCCAAAGGTACGAACTAGATTGCATCAACAACATGGCAGTGTTCACTCTCTTTTCAGGAAAATACCATGTCCAGGAAATCAACTATATCAAGTACCAGATCCGACTCACCGACGCCGGTGTCATGGAGGATGCTTGCTCCTTTCCTCACTATTTCTTGTACTCAGATAATTTTAGTTTTATCGATATTCCTTACTATTCTACACCAGATGTGCTTACTTTTCGAGATATGATGGAGGATCCTTTCGTTTCCTATCCAACCATAGCGTTCTTAAACTGTTCAAATCAAGTGACTAATGACCCTCGCTATGTGGAAATGGATACTCATGGTTGCAATTCTAAAGGGCATATTTATGCCATCCAAAATGACAATAATTGCTACGGATTTAGTTTGATGGACATCAAGGTTGGGTGTAGTCTTAAGGTTGCAACCTTTGCAAACTACGTTAAAATAATCAAATTGTCGGAAAACAGTTACAGTGTGGAGATGAAGGATGGGTTTAATGTTTCTTCCTATAAAATCCAAAAGTGGCTTAAAGAGGGGTTTTGGTTGTCTTGGTTGGTGCCTATCATTTGTAGGGATAAATGCGGAAAAGATGTGAAATGCGTTATGGACGAAACCACACAAGAGGTTCAATGTGATCACCACCGTTACTGTCACTACGTCACTACTACCAGCACAAATTGTGGAATGCTACCACGGATTCATGAATATATAATATCATATTTTCATGGCATTATGACTGGTTTATGGAGTAGAATAACATTTCGTACGATAGAGATCGATGGCTTTATAGCCATATACATAGGACGAAATGTTCTACCAATATTTATAGTAGCTAGATATCTATTTGGAGTTGTATTTCTGTTTGGACTACTAATTTATAGGTGGCATAGAAGGCATTTATTATTGTATGAAAACATCGAATGGTTTTTGTTAGACAACAATTTAAATCCCATTAGGTATGAATACGGAGAAATAAAAAGAATGACCAGGAGTTTCAGAGTTAAATTAGGTGAAGGAGGTTTTGGTTCTGTGTATAAAGGAAAGCTTCGAAGCGGGTCAGATGTAGCTATAAAGATGTTGAACAATTCCAAATCTAATGGACAAGAGTTTATTAATGAAGTGGCTACAATTGGAAGAATACACCATATAAATGTGGTACGTCTTGTTGGATATTGTGTAGAAGGAAAAAAACGCGCTCTAGTTTATGAATACATGCCTAATGGATCATTGGATAAATTCATTTTCTCTAAGGAAGGAAGTGTTCCTTTAAGTTATTCAAAAGCATATGAAATATCTCTTGGAATAGCTCATGGAATTGCATATCTACATCAAGGTTGTGATATACAAATTCTACATTTTGATATCAAGCCTCATAATATTCTTCTAGATGATAACTTTATTCCAAAGGTTTCTGATTTCGGACTTGCAAAACTATATCCGATAAATGATAGCATTGTCACTTTGACTGCTGCAAGAGGAACTTTGGGTTATATGGCTCCAGAATTGTTCTACAAAAACATAGGAAGAGTATCTTATAAGGTTGACGTTTATAGTTTTGGTATGCTTTTGATGGAAATGACAAGTAGGAGAAGGAACACAAATCTTTGTGAAGAACATTCAAGCCAACATTACTTTCCATTGTGGATCTACGATCAATTTAAAGAAGAAAAATATGTTGACATGGAAGATGCTTCAGAAGGGGATAAGGTATTAACAAAAAAAATGTTTTTAATTGCACTTTGGTGTATTCAATTGAAACCAAGAGATCGACCTTCAATGAAGGAAGTAGTTGAGATGCTTGAAGGGGAAATTGAAAGTATTGAAATGCCTCCAAGACCTTCTTTTTACCCTCATGAAATGTCTACACCTAATGACATAATCAAGTCTGACCAAGAAACATGGAGTGATACCACTAGTTTCAATACCTACCATGATGGAGATTAATGTTAATAGAGTTGGAGTTGGATAACTACTAAGATTTAATAGAGTTGTCTTCTCCATTTATAAATAGCAGAAACAACCTTTATTGTGTCATAAAGCAGTCATAACTTACCTTTTTTTTTTTACTTAGTTCCCTTGTATGGTG	2334	0.3578	MTLLSSFSYVSIIFLLFLQTCSAKHHPSCAPSSCGKIHNITYPFRLKGDPQGCGLQRYELDCINNMAVFTLFSGKYHVQEINYIKYQIRLTDAGVMEDACSFPHYFLYSDNFSFIDIPYYSTPDVLTFRDMMEDPFVSYPTIAFLNCSNQVTNDPRYVEMDTHGCNSKGHIYAIQNDNNCYGFSLMDIKVGCSLKVATFANYVKIIKLSENSYSVEMKDGFNVSSYKIQKWLKEGFWLSWLVPIICRDKCGKDVKCVMDETTQEVQCDHHRYCHYVTTTSTNCGMLPRIHEYIISYFHGIMTGLWSRITFRTIEIDGFIAIYIGRNVLPIFIVARYLFGVVFLFGLLIYRWHRRHLLLYENIEWFLLDNNLNPIRYEYGEIKRMTRSFRVKLGEGGFGSVYKGKLRSGSDVAIKMLNNSKSNGQEFINEVATIGRIHHINVVRLVGYCVEGKKRALVYEYMPNGSLDKFIFSKEGSVPLSYSKAYEISLGIAHGIAYLHQGCDIQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPINDSIVTLTAARGTLGYMAPELFYKNIGRVSYKVDVYSFGMLLMEMTSRRRNTNLCEEHSSQHYFPLWIYDQFKEEKYVDMEDASEGDKVLTKKMFLIALWCIQLKPRDRPSMKEVVEMLEGEIESIEMPPRPSFYPHEMSTPNDIIKSDQETWSDTTSFNTYHDGD	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g03063	703	ProSitePatterns	Protein kinases ATP-binding region signature.	392	414	IPR017441	GO:0005524
	Pste4g03063	703	Gene3D	Phosphorylase Kinase; domain 1	368	460	-	-
	Pste4g03063	703	FunFam	PR5-like receptor kinase	461	667	-	-
	Pste4g03063	703	Pfam	Wall-associated receptor kinase galacturonan-binding	29	92	IPR025287	GO:0030247
	Pste4g03063	703	ProSiteProfiles	Protein kinase domain profile.	386	671	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g03063	703	CDD	STKc_IRAK	392	658	-	-
	Pste4g03063	703	Pfam	Protein kinase domain	390	654	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g03063	703	Gene3D	Transferase(Phosphotransferase) domain 1	461	665	-	-
	Pste4g03063	703	FunFam	serine/threonine-protein kinase PBS1-like	364	460	-	-
	Pste4g03063	703	SMART	serkin_6	386	656	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g03063	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	506	518	IPR008271	GO:0004672\|GO:0006468
	Pste4g03063	703	SUPERFAMILY	Protein kinase-like (PK-like)	373	657	IPR011009	-
	Pste4g03063	703	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	359	676	IPR045874	GO:0004672

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g03063	Pste-Chr4	22121533	22132633	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g03063	361	700	Receptor kinase-like Gene Family	AT5G38280	46.286	3.28e-101	323

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Pste4g03063		Pkinase	1.1e-47	CL0016