Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03062 AAACAGGAAGCAGAAGACAGACCCTAGAGAAATGATACAGGAAGATCAAGGACAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCCTATCAAGAGCAGCTTCTCCTTCAGCAACAGATGCAGCAACAAAACAATGATATGTTTGGAGGAGGAGGAAGAGGATTGAATATGTACCCTGGTGAAGTTTCTCCAATCATGCATCAACCATGGTCTATGCCCCACCATCATCAGGTTCATCCCCACCCCTTCAACCCTGTGAGAGAGCATGACCCTTTTCTTGCCCCTCCCCAACCTTCACCTTATGCAACTTTGTTCAACAGAAGGGGCTCTTCTCTTCAGTTTGCATATGATGGTTCATCTTCCGACCATCTTAGGATCATATCCGACACCCTTGTTCCTGTGGTTCAACCTGGTTCAGCACCCTTTGGCCTCCAATCCGAGCTGGCTAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCCCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAGCTGCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTCAAGGAGCTGAAGCGTCAAACCTCACTTATAGCAGAATCGAGTCCGGTTCCTACGGAGGTTGATGAATTAACAGTAGTGGACGAATCTGATGAAGATGGAAGGTCAGTGATCAAAGCCTCTTTGTGCTGTGAAGATAGATCTGATCTGTTACCTGAACTCATCAAGACCTTGAAAGCCTTGAGATTAAGAACCCTTAAGGCTGAGATGACAACGCTTGGAGGGCGTGTCAAGAACGTGTTGTTCATAACTGGGGAAGAAGCAGACTCAAGCAGTGGCAGTGAGGACCACAGCCACCAACAACAGTACTGCATTAGTTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGCGTTGGAGATGAGTCTACTTCTGCAAATATTAAGAGACAAAGGACCAATATAATATCCATGTCCTAGAAAGGATGGAGGTCTTTATGAATTTTATTTGATTAAAGGCCTATCATTATTATCTACTTAGTTGTTATATATATATATATATATATATATTTTTACATATTTTTATTTGCATATTTTTTTGGG 1174 0.4344 MIQEDQGQCSSQAINNYHQAYQEQLLLQQQMQQQNNDMFGGGGRGLNMYPGEVSPIMHQPWSMPHHHQVHPHPFNPVREHDPFLAPPQPSPYATLFNRRGSSLQFAYDGSSSDHLRIISDTLVPVVQPGSAPFGLQSELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEVDELTVVDESDEDGRSVIKASLCCEDRSDLLPELIKTLKALRLRTLKAEMTTLGGRVKNVLFITGEEADSSSGSEDHSHQQQYCISSIQEALKAVMEKSVGDESTSANIKRQRTNIISMS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03062 339 Gene3D - 149 210 IPR036638 GO:0046983
Pste4g03062 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Pste4g03062 339 Pfam Helix-loop-helix DNA-binding domain 157 203 IPR011598 GO:0046983
Pste4g03062 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 210 IPR036638 GO:0046983
Pste4g03062 339 CDD bHLH_AtAIG1_like 149 225 - -
Pste4g03062 339 MobiDBLite consensus disorder prediction 320 339 - -
Pste4g03062 339 PANTHER TRANSCRIPTION FACTOR BHLH30 33 335 IPR045847 GO:0003700|GO:0006355
Pste4g03062 339 SMART finulus 160 209 IPR011598 GO:0046983
Pste4g03062 339 MobiDBLite consensus disorder prediction 318 339 - -
Pste4g03062 339 FunFam transcription factor bHLH30 149 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03062 Pste-Chr4 22109698 22111911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03062 10 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.695 5.34e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g03062 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g03062 4 22109698 22111911 Pste4g03062 4 22109698 22111911 ECH