Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03029 ATGGGAAACAAGGTCAATTGTGACAATCAATATGCTATGAACAGAGGTCCTTGGTCTGCTGAAGAAGACAAAGTTCTTATGAACTATGTTCAAGTCCATGGAGAAGGAAAATGGAGAGAGCTGTCTAAAAGGGCTGGCTTGAAAAGATGTGGAAAAAGTTGTAGACTCCGATGGTTAAATTATCTCAAGCCAGATATCAAGAGAGGAAACATTACTTCGGATGAAGAAGAACTCATTATCAGACTACATAAGCTTTTAGGGAATAGATGGTCTCTAATTGCGGGTCGCTTACCAGGACGAACAGACAATGAAATCAAGAATTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAGAAGCACGAGCATGACAAAGTTCTTGGCCACAACAACACTCATATCAAATTAAAAATCGAATCTCCAGTGTGCTCAAAAAATTCCTCCTTGGATACTGTTCCTGATCCTGCAAATTCCACTCACCCAGTGATGATTAAACCAAAATCAATGAGGTGTACCAAGGTTATGATGCCAGTAAGTGATTCACTCAACACAATGAATTTAATTGCAACAAGCTGGGACAATCAGAACCCTTCTGCATCCATGCCACAAGAGAACCATAATCATTTCTTAACAGGGGTCCTCCAAGACTTTGGCACAAGTGACTTGCTAATGTCCTACGACTACGAGGATGATTGTCATTTTAAAGGATATACTTGTCTCGAAATATCCCAACATATTTTTGAAGATGAAACATGGAGCCTAGATGATTCAATGGTAGAAGAAGCA 786 0.3931 MGNKVNCDNQYAMNRGPWSAEEDKVLMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNITSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQKHEHDKVLGHNNTHIKLKIESPVCSKNSSLDTVPDPANSTHPVMIKPKSMRCTKVMMPVSDSLNTMNLIATSWDNQNPSASMPQENHNHFLTGVLQDFGTSDLLMSYDYEDDCHFKGYTCLEISQHIFEDETWSLDDSMVEEA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03029 262 SMART sant 67 115 IPR001005 -
Pste4g03029 262 SMART sant 14 64 IPR001005 -
Pste4g03029 262 Gene3D - 70 140 - -
Pste4g03029 262 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pste4g03029 262 Gene3D - 15 67 - -
Pste4g03029 262 CDD SANT 72 113 IPR001005 -
Pste4g03029 262 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 184 - -
Pste4g03029 262 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pste4g03029 262 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pste4g03029 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pste4g03029 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Pste4g03029 262 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste4g03029 262 FunFam Transcription factor TT2 71 140 - -
Pste4g03029 262 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pste4g03029 262 CDD SANT 17 62 IPR001005 -
Pste4g03029 262 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03029 Pste-Chr4 21690805 21691903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03029 7 133 MYB Transcription Factor Family AT3G13540 64.615 3.95e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste4g03029 Myb_DNA-binding 4e-15 CL0123