Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03025 ATGGCTGCAGCTTCCTCATCCACTCCATTCTTGGGAATCAGAGAAGAAAGCTCTCAGATTACAACACAACATCAACCCTCTGCAGTTGCTCCAACCACAGTGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATGCAACAAAGAGTTTTTAAATAATTTGTTGTTTGTCATTTTTGATGGGGTAATAGATCCAGATGCGGAGGTGATAGAACTATCACCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAAAGAAAGGTTTATCTGTGTCCCGAGCCCACTTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAAAAGCACTACTCTCGCAAACACGGCGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCACAGGGCCTTTTGTGATGCGCTAGCACAAGAGAGTGCAAGATTCCCCAGTGGCTTAAACCCTTTGGGGACTCATTTGTTCGGCACAAACCACACAAGTTTAGGCCTATCCCAAGTGAGTACCCAACTTTCCCAAGTCCAAAATCAGAACCAAACAGCCACAAATAGCAGCATTTTGCGCCTTGGCAGTGTTGGTGGCACAGCCAAGTTTGAGCACTTGATTCCATCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATACCTTCCTCAGCTTTCTTCATGAATGAAAACACAAATCAAGCATTTGAAGAACACCAATCACAACAAGGACATTTATTCCCAAGCAAACAACTGCATGGCATGCAACTCCCTGATCTTCAAGGCAACAACAACAACAACTCCAATTCTTCATCAGTAACTGCTTCTTCAAATTTTTTCAACCTCGGCTTCTTCCCAAGTAACAATAGCACTGGCACCATAATTTCTGACCAGTTCAACAACATAAGTGGTAGTGATCAAGGAACTACAACAACAACACTCTATGTTAATAACAACCCCGACGTAGGTGATCAAGTTGGTTCGGGTTTTTCTTCACTCTTTGGCAATTCAATAGAAAATGTGTCATCCCCTCACATGTCTGCCACTGCATTGCTTCAACAAGCTGCTCAAATGGGTTCAACCACAAGCACCAATAACGGTTCTTCTTTACTTAGAGGAATGTGTAACAATGGTTCCAAAGCTGACAATAACCACCACCACAATCTTCAACGGTTAATGAATTCTATTGCCAACGGAAACACATCCTTGTTTGGGAACATGCAAGGAAACGACAACAACCTTTGCGGCTTTCACAACGTGGATGAGTCCAACAATAAGTTGCCCCAGAATGTTAATGTTAACTTTGGAGGTTCTGATAAGTTGACCTTGGACTTTTTGGGTGTTGGAGGAATGGTGAGAAATAATATGACTGGTGGATTTTTACAAAGAGAACAACAACGTGTCATGGGTGCTTTGAGTTCTTTGGACCATGACCTAAAGTCAGCACAGTCGAATCATCATTATGGAAAGTCAACACTGCAATAA 1698 0.4287 MAAASSSTPFLGIREESSQITTQHQPSAVAPTTVPQKKRRNQPGTPCNKEFLNNLLFVIFDGVIDPDAEVIELSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARFPSGLNPLGTHLFGTNHTSLGLSQVSTQLSQVQNQNQTATNSSILRLGSVGGTAKFEHLIPSLNQSSFGHSPQSIPSSAFFMNENTNQAFEEHQSQQGHLFPSKQLHGMQLPDLQGNNNNNSNSSSVTASSNFFNLGFFPSNNSTGTIISDQFNNISGSDQGTTTTTLYVNNNPDVGDQVGSGFSSLFGNSIENVSSPHMSATALLQQAAQMGSTTSTNNGSSLLRGMCNNGSKADNNHHHNLQRLMNSIANGNTSLFGNMQGNDNNLCGFHNVDESNNKLPQNVNVNFGGSDKLTLDFLGVGGMVRNNMTGGFLQREQQRVMGALSSLDHDLKSAQSNHHYGKSTLQ 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03025 565 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Pste4g03025 565 FunFam protein indeterminate-domain 12-like 63 131 - -
Pste4g03025 565 SUPERFAMILY beta-beta-alpha zinc fingers 83 180 IPR036236 -
Pste4g03025 565 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 533 IPR031140 -
Pste4g03025 565 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Pste4g03025 565 Gene3D Classic Zinc Finger 138 216 - -
Pste4g03025 565 SMART c2h2final6 160 180 IPR013087 -
Pste4g03025 565 SMART c2h2final6 84 106 IPR013087 -
Pste4g03025 565 SMART c2h2final6 125 155 IPR013087 -
Pste4g03025 565 MobiDBLite consensus disorder prediction 17 46 - -
Pste4g03025 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Pste4g03025 565 Gene3D Classic Zinc Finger 66 132 - -
Pste4g03025 565 Pfam Zinc-finger double-stranded RNA-binding 84 106 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03025 Pste-Chr4 21650898 21654601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03025 36 230 IDZ Gene Family AT2G02070 81.026 7.16e-112 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g03025 zf-C2H2_jaz 3.4e-05 CL0361