Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03011 CACTCTCTCTCTCTCCACCATACACTTCCTTCAGCCATCTTGTACTTTCTCAATCTGTATATAAAAGCAAACCTACATAGCCTTGTACTGTTCCCACTCTCTCTTCAAACACAAACATTTTTTCCACTCATGGCAGACCCTTATTCCAATTTCTTCTCACCAGGTTTCTTCCACCACTACCCTTCTCCAAACCCTTCACCCCACAATCCCTATGCTCACAATAATAGCTGCATCAACCAAACCACCACCAACATCAACAACAGCACCTTTTTCCACTTCCACCACTTTCAAACCACCATCACTTCTTGCTCCTCCTCCTCTTCACCCCCTTCCCCTCCCTTGAGAGAAGCCCTTCCCCTCCTCAGCCTCACCCCAAACAATGATGAAGAGGAGGACCATGACCATGACCATGACCAGGATCAGGATCAGGATCATCAGTTTTGCACTGCCATGGAATTGGAAGAGGACTGTCATCACAGAAGAACCCTCAAGGAGGAGGAACAAGAAGAGGAGGGTGATGACAGTGTTACTGTTGCACTTCACATAGGGTTGCCAAGCCCAAGTGCTGCTGAAATAGCTTCTGTTCTCTCTTCAGCTTGTTCCACAGAGAAAGAACAGCAACATCAAAGAGGTGGAGGAGAAGGAGATGGTAGTAGTAATAATAACAATGGAAGTGAGGATTGTTCTTCAGGGTTCTTGTCCAACAGACTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGATTTCAGAACCCTTCAAACACACTACAAGAGAAAGCATGGCATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGTGATTGGAGAACTCATGAAAAAAACTGTGGGAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTTAAAGACCACATCAAAGCCTTTGGAAGTGGCCATGCAGCTTATGGAATCGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTCGAACAAGATAATGAGTAAAGACATAAGGAAAATCCATGGAACTGGTTTATTTATATATATGTCTCTATGTGAATTATCTTATTATTCTTAAATCTTAGTTAATTGTGAACTAATTATTTATTATGAGTACATATCCATGGCTTCCCATTTGATAAGAACTATATATATAAGCACCAAGTTTAGACGG 1417 0.4382 MADPYSNFFSPGFFHHYPSPNPSPHNPYAHNNSCINQTTTNINNSTFFHFHHFQTTITSCSSSSSPPSPPLREALPLLSLTPNNDEEEDHDHDHDQDQDQDHQFCTAMELEEDCHHRRTLKEEEQEEEGDDSVTVALHIGLPSPSAAEIASVLSSACSTEKEQQHQRGGGEGDGSSNNNNGSEDCSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDNE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03011 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Pste4g03011 372 PANTHER ZINC FINGER PROTEIN WIP2 39 370 IPR043584 GO:0003700|GO:0010468
Pste4g03011 372 MobiDBLite consensus disorder prediction 81 100 - -
Pste4g03011 372 SMART c2h2final6 298 318 IPR013087 -
Pste4g03011 372 SMART c2h2final6 214 236 IPR013087 -
Pste4g03011 372 FunFam Zinc finger protein WIP2 267 349 - -
Pste4g03011 372 Gene3D Classic Zinc Finger 213 236 - -
Pste4g03011 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 318 IPR013087 -
Pste4g03011 372 Gene3D Classic Zinc Finger 276 352 - -
Pste4g03011 372 MobiDBLite consensus disorder prediction 154 187 - -
Pste4g03011 372 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Pste4g03011 372 MobiDBLite consensus disorder prediction 83 100 - -
Pste4g03011 372 SUPERFAMILY beta-beta-alpha zinc fingers 280 318 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03011 Pste-Chr4 21492098 21494529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03011 1 372 C2H2 Transcription Factor Family AT3G57670 61.381 8.48e-149 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g03011 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g03011 4 21492098 21494529 Pste4g03011 4 21492098 21494529 ECH
Pste4g03011 4 21492098 21494529 Pste3g01421 3 8816210 8824531 ECH
Pste5g00373 5 2467668 2470271 Pste4g03011 4 21492098 21494529 PCT