Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02992 CTTTTCAAAAGGTCAAACGCAAAACCTCATAAACACTCCTTCAATTCCATTCTCTCCAATTTCAATTTCATTCTTACACTTTCATTTGAATTTTCTCTCTTAACGAGTGACACAACACAAGCTTCTCCTTCACCTCATGCTATTGGTGGGTTTCAATTCTAGGACGTGATCCCTCATATTTTCCTCATCTGGGTTCCTTCCAATTTTGAAGCACCCTCGATCTTGTGGTCGAAGTTTGCAGCTTTGACTTTTTCTCAACATGGGTGGAAGCGAGAGCTCGAAGGGTGTGGTTATGGGTCGTTTGATTGAGTGCGTCAAGGAGATCTCTGGGTTTCCAGAGTGTCAGAACTTTTGCAAACGGGTATATGGGAATTTGGTTCGCAGGGTGAAGCTGCTGAGTCCTCTCTTTGAGGAATTGAAGGATAGTGATGAGTGCCTCAGCGACGAACAGCTTGAAAGCTTTGAGTCTCTCTTGGTTGCTTTGGATTCTGCTAAGACCCTTTTAAAGGATGTGAACCAAGGGAGTAAGCTTTATCAGGCATTGCGGAGGAATGATATAGCAGATAATTTCCAAAAAATAACTGAAAAAATTGAAGCTGTGCTCAATGAAATTCCTTGCCACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGGTAAACCTTTATCATAAATTATTAGAAGGGTTAGCATCTGTTGTGCATTATTTTTCACAACTATTTCATGCTTTCCAGATTGAACTGGTGCATGCACAATTCAAAAGAGCTAAGGCTCAAACAGAATTTGCTGATATACAACTAGACCTAGACATGTCCATGGCACAAAAAGAAAAAGACCCTGATCCTGCTATACTCAAAAGACTTGCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAGCAGTGGAGAACTAGGAGACTCTTTTGAAATGATGACATCCCTTCTAAGCAAACTGAGGGACTGTGTGCTCGCAGAAAACCCTGAAGTTGACACCAGTGAATGTGAAAAATTGTCAGTTAAGCACAGGTCTCCTGTGATCCCAGATGATTTTCGATGTCCTATTTCTCTTGAACTAATGAAAGATCCAGTAATCGTCTCCACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTCGTGCATACAGCCCTGACCCCTAACTATGTTTTGAAGAGTCTGATTGCTTTGTGGTGCGAAAGCAATGGCATTGAGTTACCAAAGAAGCAAGGGAGTTGTAGAACGAAGAAATGTGGTGGAAACAGTCTCTCTGATTGTGATCGTACTGCTATTAGTGCTTTATTGGATAAACTAACGAGTAATGATATAGAACAACAAAGGGCAGCTGCAGGTGAGCTCCGCTTGCTGGCTAAGAGGAATGCAGACAACCGAGTATGCATTGCTGAGGCAGGAGCAATACCACCTCTTGTAGATTTGTTGTCTTCTTCAGATCCTCGAACTCAGGAGCATGCTGTTACAGCTCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAATGCTGGAGCCATACCAGATATTGTAGATGTACTGAAAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTATTTAGTTTATCAGTTCTAGATGAGAACAAGGTGCAAATAGGTGCTGCTGGAGCTATCCCTGCTCTTATAAAGTTGCTTTGTGAAGGTACTCCTAGAGGTAAGAAGGATGCTGCCACTGCTATCTTTAACCTAACTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGCCCCACTGATACAATTTATGAAGGATGCTGGGGGTGGGATGGTGGATGAAGCACTAGCTATAATGGCAATCCTTGCAAGCCACCCTGAAGGCAGGGTAGCGATTGGTCAGGCTGAGCCAATCCCTCTTCTAGTTGAGGTTATACGAACTGGCTCTCCACGCAACCGAGAGAATGCTGCTGCTGTCTTGTGGTCGCTTTGCACAGGAGATCTTCTGCAATTAAAACTAGCAAAAGAACATGGTGCAGAAGCAGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGCATACTAGAACTCTTGCAGCGAATGGAAGGGGATGATAATGTGCTAAGTTCATAGTCCTTCTCTTACTTCATTATATAGTATTGTGGTTCATAGAGGGTCAGAAAATTATGTCTTATAAACCATGGCCACATGGGGTAGGCAAACTATGCTGTAACTTTGTATTATGTTTTGGTTGTCATTTGTATGTAAAGGAAATGCTGTAAATTGTCTATCGAATAAGTTGTCCGAGGATTATGAATGGAATAAGTTTCTGCTAATGTCTCACACAGCAAAGCTTGTAATTTTTGGAACTTATTATTGTAGTAAAAACCAAACATTTAAAGCTGTTAAATACCAGGGTGGATC 2524 0.4164 MGGSESSKGVVMGRLIECVKEISGFPECQNFCKRVYGNLVRRVKLLSPLFEELKDSDECLSDEQLESFESLLVALDSAKTLLKDVNQGSKLYQALRRNDIADNFQKITEKIEAVLNEIPCHKLEISEEVREQVNLYHKLLEGLASVVHYFSQLFHAFQIELVHAQFKRAKAQTEFADIQLDLDMSMAQKEKDPDPAILKRLAEKLHLRTINDLRKESSELHELLITSSGELGDSFEMMTSLLSKLRDCVLAENPEVDTSECEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGNSLSDCDRTAISALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLTIYQGNKARAVKAGIVAPLIQFMKDAGGGMVDEALAIMAILASHPEGRVAIGQAEPIPLLVEVIRTGSPRNRENAAAVLWSLCTGDLLQLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRMEGDDNVLSS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02992 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Pste4g02992 657 Pfam U-box domain 273 343 IPR003613 GO:0004842|GO:0016567
Pste4g02992 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Pste4g02992 657 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Pste4g02992 657 Pfam Armadillo/beta-catenin-like repeat 401 440 IPR000225 GO:0005515
Pste4g02992 657 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Pste4g02992 657 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Pste4g02992 657 FunFam RING-type E3 ubiquitin transferase 488 656 - -
Pste4g02992 657 PANTHER U BOX DOMAIN-CONTAINING 34 645 - -
Pste4g02992 657 CDD MLKL_NTD 32 134 - -
Pste4g02992 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Pste4g02992 657 CDD RING-Ubox_PUB 274 326 IPR045210 -
Pste4g02992 657 Gene3D - 360 654 IPR011989 -
Pste4g02992 657 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Pste4g02992 657 FunFam RING-type E3 ubiquitin transferase 273 346 - -
Pste4g02992 657 SUPERFAMILY ARM repeat 368 645 IPR016024 -
Pste4g02992 657 SMART arm_5 483 523 IPR000225 GO:0005515
Pste4g02992 657 SMART arm_5 565 605 IPR000225 GO:0005515
Pste4g02992 657 SMART arm_5 442 482 IPR000225 GO:0005515
Pste4g02992 657 SMART arm_5 524 564 IPR000225 GO:0005515
Pste4g02992 657 SMART arm_5 401 441 IPR000225 GO:0005515
Pste4g02992 657 Gene3D - 11 121 IPR036537 GO:0007166
Pste4g02992 657 FunFam RING-type E3 ubiquitin transferase 371 487 - -
Pste4g02992 657 SUPERFAMILY RING/U-box 272 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02992 Pste-Chr4 21321591 21325260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02992 11 650 U-box Gene Family AT3G54850 64.219 0.0 807
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02992 4 21321591 21325260 Pste4g02992 4 21321591 21325260 ECH