Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02986 CAACACTTCCGTTACAACGGACAAAACACAAATACCCGTATAATTGAGAACGCTGAGAAAGAAGATTGTACAGATTACAAAAACCGTAGCGTGGCGACGTTGCTTTCTTAGTACTTGAAATGGCGGAGAAGCAATCTCACATACACAATCACAGAAACACACACAAATTGAACTGAGAGAGAAAAAAACAAAGAAAAAAGAGAAAGAGAAAGAGAGAGAGGAAGAAAAAAAAAAAAACACATTGACCGCCATTAAAAATCGTAACGCATTCTTTTCGTTTTATCTTCTCTCAATTCCTCAGCTCTCAGGTTTCTCCTTCTCTACAGTTTTTCTCCGGTTCGGTTAGGTTCTGTACGGTTCAATTGGATCATGGAGGAGACCTCGCTCGAAGCGATTCAATTCAACGACGAAATCCAAGGTCTCATGGCTCCGGCGCCGGAAACCGCCAATTCGTTCACCGCACTGCTCGAGCTTCCGCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGAGCGCGCCGGAAAACCGCCGCGCCACGGTCCCAAACCCTATCCGTTGACCTCTTTCGCCGCCGCCAACCTCACCTTCCCCTCCAACACCTCGCTGATCGAACGCGCCGCCAGGTTTTCCGTCTTCGCCGGCGAAAATTCCAACTCGAACACAAACACAAACACGAACTCGAACTCGAATTCGCCAGAGGTGAAGCGCGAGCTGCTGGAGTACGATTCGACGCCGAGCTCAACCTGCGGTCGCGTTTCCGATCTCGCCGCCGAGAACAAGAATCCGAAGAGGAAGGAGCGAGAGAAGAAGGTCAAAGCGTCGTCGAAGAAACGCAAGAGCGTTACCGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGTGTTCGTCGAGGGCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAACTGGTCCCGGGTTGCAACAAGATATCAGGAATGGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCGCTACAGCAAGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAATCCAGTAATTGATTTCAACCTCGACAGCTTATTGGCTACAGAAGGTGTGTCTCCAATGGACTGTAACTTCCCTCGCACAGTTGCACCCGTCATGTGGCCGGAAATCCCGCAGAATGGAAACAGACAACAATATCATCAACCAGAAATCCCACAGAATATAGACAGACAGCAATATCAGCAACCAGAAATCCCACATAATGGAAACAGAGAACAATATCAGCAACCGTGGCAGTTTGAAGCTTTCCACCAACCCCTTTGGGGGAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGGTATAGATCAATATATCTATGCATTTAAGTCAGTTGAAGATGGAGCTCTGAAGGGCTACAGAGGTGGTGATACCAGTAGTAATTAGCCTATTATTAGTGTATATAAAAAATATAGTATTAGCAATTAGCCGTGATTTGAGCAGCCTCAACATTCAGCAGGCTTTCCTCATCTCTATTTTGTCGGAGTCAATTGAAAATCTGGATTTTATTCAGCCAGCAAGGAAGAAGAAATGGCATGCTATTTTTATATAATATATTACTATCACTATGTATACTAACTACAGGGATCATTCAATCTCTGAAGGAGTTGATTGATTGATTCAGATTGTAAAATCATTGAACAGATGTTACTGAACTATCATGGAAGTTTGTTGCTTTGTTCATTGAATGCTACTTAGATGGTTGGTTCTTATATAATTTTTGTGAACAAACTATTGTTATCCTTTATCTTTTTCCTTTTTTGTTTTATCTTTTCCTTTTCTATCACAAAAGCAATAACTAGTCTTGTC 1947 0.4438 MEETSLEAIQFNDEIQGLMAPAPETANSFTALLELPPTQAVELLHSPERAGKPPRHGPKPYPLTSFAAANLTFPSNTSLIERAARFSVFAGENSNSNTNTNTNSNSNSPEVKRELLEYDSTPSSTCGRVSDLAAENKNPKRKEREKKVKASSKKRKSVTDESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGMALVLDKIINHVQSLQQEVEILSMKLAAVNPVIDFNLDSLLATEGVSPMDCNFPRTVAPVMWPEIPQNGNRQQYHQPEIPQNIDRQQYQQPEIPHNGNREQYQQPWQFEAFHQPLWGREEDNTNFMTPENSLLSYDSSANSGIDQYIYAFKSVEDGALKGYRGGDTSSN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02986 384 Pfam Helix-loop-helix DNA-binding domain 184 231 IPR011598 GO:0046983
Pste4g02986 384 MobiDBLite consensus disorder prediction 119 169 - -
Pste4g02986 384 MobiDBLite consensus disorder prediction 154 169 - -
Pste4g02986 384 Coils Coil 220 240 - -
Pste4g02986 384 CDD bHLH_AtBPE_like 170 255 - -
Pste4g02986 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 230 IPR011598 GO:0046983
Pste4g02986 384 MobiDBLite consensus disorder prediction 91 110 - -
Pste4g02986 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 249 IPR036638 GO:0046983
Pste4g02986 384 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 99 316 IPR024097 GO:0006355
Pste4g02986 384 SMART finulus 186 236 IPR011598 GO:0046983
Pste4g02986 384 Gene3D - 177 248 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02986 Pste-Chr4 21270083 21276119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02986 2 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.136 2.72e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g02986 HLH 1.7e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02986 4 21270083 21276119 Pste4g02986 4 21270083 21276119 ECH
Pste5g00416 5 2748856 2761284 Pste4g02986 4 21270083 21276119 PCT
Pste9g01243 9 10721304 10735854 Pste4g02986 4 21270083 21276119 PCT