Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02971 CTAGCACATAGCACAAACCACAAACCACATAGCACATAACATAAACTTACCCTTTTATATTTATCCCTTTCTATCTTCACACACCTCTCTCTCAACAAGTCCCTTTCACCGGATCTCTCTTCCCATCTCTGCTCCTTTCCTAGAACTGTGTGCAACCAAGCCAAAACCGGTTCTTCCTCGGTTGCTTCTCCCATAAGATCTTATCCCACCACCCCAGCTTAGTCCCTAAGCTGAAAAACACAAAAACACATCACAGAACAAAAAAATTCTCAGAATTTTTCCCCCCTGGATAAAAAGTGACTAGTCTTTTCAACAATGATTCCCCAGCTTCTTATACCATTGTGACTTCACCTTCTTTTTTTTTTCTTCTTCTTTTTACCGTGTATACTATTATATAATTGCGCAACAATGGATTCTCATACCCATCATCATCAGGGTTACCAACTCCACCAACAGAACCAATCCTCTTCTGGGCTGCTTCGTTTTCGCTCTGCTCCAAGTTCCCTTCTTTCAAATCCCACACCTTTTGTAGGTTACGGTGGTGAAGTTGGTTCTGGTAGCTTCCAAGACTTGGAAGGAAACAACAGCAATAACAATAGCAGCAGCAACAACCACAAGGGTTGTTCCAAGGCTTTGAGTTTGATGAATTCGCATAAGGGGTATGGTGGTGTGGGGTTGCCACCTCACTATCCGAGGCATGGTTCTTCTTCTTCTGCTACTTCCAGTTCTGCTATGGAAGGGTCTTTGGGGTTGATTGGTTCAATGGGAATGGATCATGAAGCACCCCATAAGAGGCTTGGATCAAATCTTCTCAGGCAGAGTAGCTCCCCTGCTGGTCTTTTCTCCAATAACAACATTCCTTATCAAAATGGGTTTGCCACTATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGGCACTAATGGTGAACTTGGTCCAAGTATTAACAGATTGAAGAATCAGATTAGCTTCTCACCAAGGAATGCTTCTTTGCTGGGAATGTTGTCGCAGATATCCGAAATTGACAGTGAAGACATTGAAGCAACTAGCCCTGATGATGATGGGAGGCATGGAGGTAATGATACTCAACATTATGGCTCTGGATTCCTCTATGGTTCTTGGAATGAGACTCCACAACTCTCAGAAAATCTCAGTGGTTTGAAAAGAGGAAGAAGTGGCAATGAAAAGGTATTATCTGATGTTCAGAATGGAGAGCTAGGAAACCAAGTTAATATGTTATCACATCACTTGAGTTTACCAAAAACGTCAGCAGAGATGATTAATATGGAGAAGTTACTTCAGTTCCCTGATTCCGTGAGAAGAACCCGGATCAGTGAAAGGATGAGAAAATTGCAAGAGCTTGTGCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAACGGGCAAACTGCAAGTGTATAAACATGCTAAAGGAAGATACAGATCAAATTGCTTGAAAGTATGCAAAGATGGCTTGGATTGAGGGCTTTTAACTTTATTGCTGAACAAGTAGAAAGAAAGATGCTAATATAGGATGCTATTACAAGAGATAGGAGGTTGAGAAATAGAGCAGAAATAAGGTGAAAAAGAATGTTATTTGGATTGATAAAAATAGGAGAGAATGAAGAAAGGAAAGTTTTCTTTACATGTTTGAATGAGTTGTAAAGAAAGTTGAAAAAGATAAGTAGATTATGTAAAGAAACTTTTTTATAAAAGTAATAAAAATTCAAGCTTTTTACTATAATATTTTTCACGATAAAAATTATTTTTAATTTTAT 1842 0.3931 MDSHTHHHQGYQLHQQNQSSSGLLRFRSAPSSLLSNPTPFVGYGGEVGSGSFQDLEGNNSNNNSSSNNHKGCSKALSLMNSHKGYGGVGLPPHYPRHGSSSSATSSSAMEGSLGLIGSMGMDHEAPHKRLGSNLLRQSSSPAGLFSNNNIPYQNGFATMKGVGNYGGVNGTNGELGPSINRLKNQISFSPRNASLLGMLSQISEIDSEDIEATSPDDDGRHGGNDTQHYGSGFLYGSWNETPQLSENLSGLKRGRSGNEKVLSDVQNGELGNQVNMLSHHLSLPKTSAEMINMEKLLQFPDSVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCINMLKEDTDQIA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02971 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 342 IPR011598 GO:0046983
Pste4g02971 370 Gene3D - 302 365 IPR036638 GO:0046983
Pste4g02971 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 357 IPR036638 GO:0046983
Pste4g02971 370 MobiDBLite consensus disorder prediction 52 74 - -
Pste4g02971 370 CDD bHLH_AtbHLH_like 303 350 IPR045239 -
Pste4g02971 370 MobiDBLite consensus disorder prediction 1 22 - -
Pste4g02971 370 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 358 - -
Pste4g02971 370 Pfam Helix-loop-helix DNA-binding domain 304 343 IPR011598 GO:0046983
Pste4g02971 370 SMART finulus 303 348 IPR011598 GO:0046983
Pste4g02971 370 MobiDBLite consensus disorder prediction 210 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02971 Pste-Chr4 21160189 21163887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02971 1 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 40.253 1.85e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g02971 HLH 7.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02971 4 21160189 21163887 Pste4g02971 4 21160189 21163887 ECH
Pste4g02971 4 21160189 21163887 Pste4g00058 4 664583 667699 ECH
Pste5g00435 5 2870547 2873275 Pste4g02971 4 21160189 21163887 PCT