Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02959 CTCTACTCTCGCTGGTTCTTTACATATCTCAGTCTATCAAAACTTCACCTGTCTACCGCCAACACAAGACAATGCAAACCACACTCACCGGATTGCTCAATGGCGTCGCCGGAATATTCCCCTCACGGCGGGCAGTCTCCGTCTCCGGAAAATTTGACCTCACCCACTCGCGCCTCCACCTTCTCGTTGAACGCGCCGCCTCGCGCCTACTCTCTGCCGGCATCAAACCCGGCGATGTCGTCGCCCTAACCTTCCCCAACACAATCGAGTTTATAATAACGTTTTTGGCCATTATCCGAGCGCGAGCCACTGCCGCGCCATTGAACGCGGCTTACACAGCGGAGGAGTTCCAGTTTTATTTATCCGACTCCGAGTCAAAGCTGTTACTAACCTCAAAAGAAGGAAACGAGCCGGCTCAGGCTGCGGCTTCCAAGCTGAGCATCCCGATAGCAACGGCTTGGCTCGCGGAAGGCGAAGCCGAAGAGCTTAGTCTCTCTCTGAGTTACACCGAGTCAGTTACCGACACGGTTTCCGAACTCGCCAACGACGCATCCGACGTGGCACTGTTTCTTCACACTTCTGGCACCACAAGTCGCCCCAAGGGTGTGCCGTTGACGCAGCACAACTTGGCCTCTTCAGTGGAGAACATCAAATCCGTGTATAGACTCACTGAGTCTGACTCGACCGTGATCGTTCTCCCGTTGTTCCACGTGCACGGGTTGGTGGCCGCGTTGCTGAGTTCACTCGCGGCGGGCGCTGCGGTGGCGCTTCCATCGGCGGGGAGGTTCTCGGCCACGAGTTTTTGGAGCGACATGAAGAGGTACAAGGGCACGTGGTACACCGCAGTTCCTACGGTGCACCAAATCGTATTGGAACGTCACTTAAAAAGCCCTGAAGCGGTTTACCCGAAGCTCCGGTTTATTCGGAGTTGTAGTGCGTCTCTTGCACCGGCTATATTGGAGCGGTTGGAGGAGGCGTTCCGTGCTCCGGTTTTGGAGGCGTATGCTATGACGGAAGCGTCGCATTTGATGTCATCGAACCCGTTACCGGAAGATGGGCCTCACCGGGCCGGGTCGGTTGGAAAGCCCGTGGGCCAAGAAATGGTAGTATTAAATGAGAAAGGTGAGATTGAAGAGGCTGAGGTGAAAGGTGAGGTTTGTATTAGAGGACCTAATGTGACAAAAGGGTATAAAAATAACCCTCATGCGAATGACGCTGCTTTTCAATTCGGGTGGTTCCACACCGGTGATATCGGGTTCTTTGATTCGGATGGGTATTTGCACCTGGTGGGTCGCATCAAGGAGCTTATTAATCGTGGAGGGGAGAAAATATCACCAATAGAAGTGGATGCTGTCCTGCTATCTCATCCAGACATTGCTCAGGCAGTTGCATTCGGAGTACCAGATGACAAATATGGCGAAGAGATAAATTGTGCAATAATCCCAAAAGAAGGATCAAACATTGACGAGGCAGAGGTGCAGACATTTAGCAAGAAGAACCTTGCAACCTTCAAAGTCCCTAAAAAGGTATTCATCGCTGATTCTTTGCCCAAGACCGCCACTGGCAAGATTCTAAGACGTCTTGTAGCACAACACTTCATTTCTCAAACTTGACCACCTCAATACTATCCTCAGTCCAAATAAATAGCTTCCCAATAAATTTTAACATTGTATTAGCTTGTGCAAGTTCCATGTTCCTTCAGATTTATATTTTAAAAATATTGTATAATCATCTATATATT 1741 0.5032 MQTTLTGLLNGVAGIFPSRRAVSVSGKFDLTHSRLHLLVERAASRLLSAGIKPGDVVALTFPNTIEFIITFLAIIRARATAAPLNAAYTAEEFQFYLSDSESKLLLTSKEGNEPAQAAASKLSIPIATAWLAEGEAEELSLSLSYTESVTDTVSELANDASDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYRLTESDSTVIVLPLFHVHGLVAALLSSLAAGAAVALPSAGRFSATSFWSDMKRYKGTWYTAVPTVHQIVLERHLKSPEAVYPKLRFIRSCSASLAPAILERLEEAFRAPVLEAYAMTEASHLMSSNPLPEDGPHRAGSVGKPVGQEMVVLNEKGEIEEAEVKGEVCIRGPNVTKGYKNNPHANDAAFQFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEAEVQTFSKKNLATFKVPKKVFIADSLPKTATGKILRRLVAQHFISQT 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02959 513 Pfam AMP-binding enzyme C-terminal domain 424 499 IPR025110 -
Pste4g02959 513 Pfam AMP-binding enzyme 17 415 IPR000873 -
Pste4g02959 513 SUPERFAMILY Acetyl-CoA synthetase-like 3 511 - -
Pste4g02959 513 Gene3D - 6 408 IPR042099 -
Pste4g02959 513 FunFam 4-coumarate--CoA ligase 2 411 512 - -
Pste4g02959 513 CDD FACL_fum10p_like 17 507 IPR045310 GO:0016874
Pste4g02959 513 PANTHER ACYL-COA SYNTHETASE 15 510 - -
Pste4g02959 513 FunFam Peroxisomal-coenzyme A synthetase 4 408 - -
Pste4g02959 513 ProSitePatterns Putative AMP-binding domain signature. 166 177 IPR020845 -
Pste4g02959 513 Gene3D - 409 510 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02959 Pste-Chr4 21073916 21077710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02959 2 512 Monolignol Biosynthesis Gene Families AT4G05160 30.930 3.93e-64 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01174 9 9499054 9503419 Pste4g02959 4 21073916 21077710 ECH
Pste4g02959 4 21073916 21077710 Pste4g02959 4 21073916 21077710 ECH
Pste9g01174 9 9499054 9503419 Pste4g02959 4 21073916 21077710 PCT