LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g02952	ACAGGTCTGCAGGATCTGTACAGGGCCTTAAACAACCCACCAATTCTGAATGGATGGAACGGGAATGATCCTTGTGAAGAATCTTGGACAGGAGTAGTATGTTCTGGGTCCTCAGTTGTACGCGTCAAAATTCGTGGATTAAACCTTACTGGGTATCTTGGAGACTTTCTCAATAATCTACAAAACTTAAAGCAACTTGATGTCAGTTCCAACTGCATAGAGGGTGAAATACCTCAGGGTTTACCGCCCAATGCCACACATATGAATTTAAGCCACAATTTCTTGATTGGACCCGTTGGCAATATTTGCCAACTCAATAAGGATGATTTCCCATCATCAGGGACCTTTCCTACAATAATTTCACCGGAACATTCAAGACAATCTGTTCAGTGGCCTCCTTCCGCAGCATTTTCAGTCCATACCAAACTTATGGTTAGTGATAAGTTTTTCTTCTATTTCTTTATTGGATATGAAATAATGGACATATCATCAAAAAGTCACATTCTACCCTCAATTAGGATTGGAGGGAATAAGTTCCAAGCCATAGACAACTCTCCTCCCTGGGCATATCCTTTGGACAACGTACCTAAAGAGCAAAATAGTAGTCGCCCACCCATAACTCAGGCAAATGCCATCGAAAACTATGATTCTCCTAAAGTAAGGAAACAAAAGAAGAAACATATGGGTACAGGAGGAATAGCTTTTATGGTTGGCGCAGGAACATTATTGGCAACAGGTTTTGCACTCTTCATTGCGATCCGTTTGAATAAGCTTCATAAACAGAGACCGGATAACTGTGAAAGCAACCATAGTTCCTCGCCTTCTTGTCCAATCAGTGCAACCAAAGATGTATCTACTACGGCCATAGATGAGAGCCTGCAAATCCCACCTTATAAGGCTGCATCTCTTTTGGGTCCAAGGCGATTAACTTCCCAGACACATAAAAGAACTGGGGAAACATCAAGAAAAAGTTTTTCAGGAAGAGACAGATTGACTGGAAGGACAAAGGTTTATACAGTAGCGGAGGTTCAGTTGGCCACGAACAGTTTTCATGAAGACAACCTTCTGGGAGAGGGATCCCTTGGCCCTGTTTACAGAGCTGAATTTCCAGATAACAAGGTTTTAGCAGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTTGTTTGTACAGCCTCCCGTCTGAAACACCCTAACATTGTTTCACTTAAAGGATACTGTTTGGAGCACGGACAACATCTTCTTGTCTACGACTATGTCAGAAATCTAAGTCTAAATGATGCTCTTCATAGTGCTGTATACAAACCTTTGTCATGGAGCACCCGTCTCCGGATTGCTCTAGGTGTTGGTCAGGCCCTGGACTATTTGCACTCGACGTTCTCTCCTCCTGTAGCCCATGGCAACTTAAAGGCTGTCAATGTTCTACTGGACGAAAATCTTATGCCTCATGTTACTGACTGTGGCTTGGCTATTTTGAGACCACTGACAAGCAATAAAGTGAAAATTCAGGCTTCTGAGATTGATATTAGAGACAAGGGATACAGTTCACCTGACCATGGCCAACCAGGAAATGGCAGCACGAAGAGTGACATCTATGCCTTTGGAGTGTTGCTTCTTGAACTGCTAACAGGAAGAAAACCTTTCGACAGTTCAAGTCCAAGGGAAGAGCAATATCTGGCAAAGTGGGCCTCATCAAGGCTTCATGATGGCGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAAAGGACATTTTCATCGAAGGCTCTTTCTCGCTACGCTGATATCATCTCTCTCTGCATTCAGCCTGTAAAGGAATTTCGACCTCCAATGTCTGAAATCGTGGACTCTTTAGTATCATTTTCTCAAAAGGCCGTTTCAAAGAACGGTACAACAGATGGTCCTGAAGCTGAACCACTTGAGAGGTCTTTTCGTACAACCACCTCACGCTTTATTGGCTCACCTGCAATGAGCTATGTATCTGCC	2010	0.4323	TGLQDLYRALNNPPILNGWNGNDPCEESWTGVVCSGSSVVRVKIRGLNLTGYLGDFLNNLQNLKQLDVSSNCIEGEIPQGLPPNATHMNLSHNFLIGPVGNICQLNKDDFPSSGTFPTIISPEHSRQSVQWPPSAAFSVHTKLMVSDKFFFYFFIGYEIMDISSKSHILPSIRIGGNKFQAIDNSPPWAYPLDNVPKEQNSSRPPITQANAIENYDSPKVRKQKKKHMGTGGIAFMVGAGTLLATGFALFIAIRLNKLHKQRPDNCESNHSSSPSCPISATKDVSTTAIDESLQIPPYKAASLLGPRRLTSQTHKRTGETSRKSFSGRDRLTGRTKVYTVAEVQLATNSFHEDNLLGEGSLGPVYRAEFPDNKVLAVKNINMAGMSFSEEEKFLDVVCTASRLKHPNIVSLKGYCLEHGQHLLVYDYVRNLSLNDALHSAVYKPLSWSTRLRIALGVGQALDYLHSTFSPPVAHGNLKAVNVLLDENLMPHVTDCGLAILRPLTSNKVKIQASEIDIRDKGYSSPDHGQPGNGSTKSDIYAFGVLLLELLTGRKPFDSSSPREEQYLAKWASSRLHDGDSLEQMVDPAIKRTFSSKALSRYADIISLCIQPVKEFRPPMSEIVDSLVSFSQKAVSKNGTTDGPEAEPLERSFRTTTSRFIGSPAMSYVSA	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g02952	670	ProSiteProfiles	Protein kinase domain profile.	350	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g02952	670	Gene3D	Phosphorylase Kinase; domain 1	310	427	-	-
	Pste4g02952	670	MobiDBLite	consensus disorder prediction	267	282	-	-
	Pste4g02952	670	Gene3D	Transferase(Phosphotransferase) domain 1	428	644	-	-
	Pste4g02952	670	MobiDBLite	consensus disorder prediction	306	328	-	-
	Pste4g02952	670	Pfam	Protein tyrosine and serine/threonine kinase	353	626	IPR001245	GO:0004672\|GO:0006468
	Pste4g02952	670	Gene3D	Ribonuclease Inhibitor	2	118	IPR032675	-
	Pste4g02952	670	SUPERFAMILY	Protein kinase-like (PK-like)	328	626	IPR011009	-
	Pste4g02952	670	FunFam	Leucine-rich repeat receptor-like protein kinase	428	637	-	-
	Pste4g02952	670	FunFam	Protein STRUBBELIG-RECEPTOR FAMILY 8	315	427	-	-
	Pste4g02952	670	MobiDBLite	consensus disorder prediction	312	328	-	-
	Pste4g02952	670	SUPERFAMILY	L domain-like	13	102	-	-
	Pste4g02952	670	MobiDBLite	consensus disorder prediction	262	282	-	-
	Pste4g02952	670	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	18	107	-	-
	Pste4g02952	670	FunFam	Leucine-rich repeat receptor-like kinase	2	110	-	-
	Pste4g02952	670	Pfam	Leucine rich repeat N-terminal domain	3	35	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g02952	Pste-Chr4	20965941	20970408	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g02952	2	670	Strubbelig Receptor Gene Family	AT5G06820	47.051	0.0	561

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-V	Pste4g02952		PK_Tyr_Ser-Thr	5.8e-32	CL0016