Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02941 TTAGCTAGAGGAAGCATCAGCATCATCATTCATCACTCAGTATCAGAAGCAGCAGCAATGAGTTCTGGTTCAGTCACCAAAGCACCACCCTCATCTTCCTCATCACCAAATTCTTCCTCTGAGTCCCTTGATGGCTTGAAGTTTGGCCAAAAAATCTACTTTGAGGATGTGAGTGTTGCAGCAACACCAACAGCTCAAGGGGCCAAAACTAGTGGTGGAGTTTCTTCTTCTTCTTCCAAGAAGAGTAGGACTTGTTCAGTGCAAGGGGCTCAGCCTCCTAGGTGTCAGGTTGAGGGCTGTAAAGTAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTAGCATGCATTCCAAGTCCCCTACTGTTGTTGTTGCTGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAATTTGATCAAGGAAAAAGAAGCTGCCGCAGGCGACTTGCTGGCCATAATGAGCGTCGTAGAAAGCCTCCACCAAACTCCATGTTAACCTCTCGATATGGCCGACTTTCTTCGACTATTTTTGATAACAGTGGCCAAGCTGGTGGCTTTCTGATGGAATTTGCTTCATACCCGAAGCTTTCGCTGAGAAATACATTGCCAACTCCAAGATCATCTGAACTGGTTCCTGCAAACCACGCTGCAATGCTTCCTTGGCAAGCCAACTCAGACACACCATCTGATTTTTTCCTGCAAGGACCAGGAAGTGGTGGAACAAGCTTCCTTGGTTCCAAGCTTCCTTTAGAGGCAAGTTACACTGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAGTCAAACCTGGGGTTCCAGAAACACTACACCAACTAGTGTGGAGCTGAACAACAGCTTGTTGAATTTCAATGAGACATCCATGACACAATTCGCTGCAGCCTCATCGCGAGCCGCAGCCGTCCATCATCTTCCAAATGCCACCTCATGGTACTTGAAGGGCATTGATTCCGGTAATTGTTCGCCAGAGGGTGTCCCTGATCTCGGTCTCGGTCAACTTTTGCCGCCTCTTCATAGCCACATTCATGGTGATCTTGATGTGTCACATCAGGAAAGGAGGCATTACATGGATCTAGGGGAGTCCAGGGCCTGTGAGTCTTCTCAC 1158 0.4767 LARGSISIIIHHSVSEAAAMSSGSVTKAPPSSSSSPNSSSESLDGLKFGQKIYFEDVSVAATPTAQGAKTSGGVSSSSSKKSRTCSVQGAQPPRCQVEGCKVDLSGAKAYYSRHKVCSMHSKSPTVVVAGLEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPNSMLTSRYGRLSSTIFDNSGQAGGFLMEFASYPKLSLRNTLPTPRSSELVPANHAAMLPWQANSDTPSDFFLQGPGSGGTSFLGSKLPLEASYTGVTDSNCALSLLSSQTWGSRNTTPTSVELNNSLLNFNETSMTQFAAASSRAAAVHHLPNATSWYLKGIDSGNCSPEGVPDLGLGQLLPPLHSHIHGDLDVSHQERRHYMDLGESRACESSH 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02941 386 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
Pste4g02941 386 Gene3D - 85 156 IPR036893 GO:0003677|GO:0005634
Pste4g02941 386 MobiDBLite consensus disorder prediction 65 90 - -
Pste4g02941 386 FunFam Squamosa promoter-binding-like protein 14 86 156 - -
Pste4g02941 386 Pfam SBP domain 95 168 IPR004333 GO:0003677
Pste4g02941 386 MobiDBLite consensus disorder prediction 159 178 - -
Pste4g02941 386 SUPERFAMILY SBT domain 93 174 IPR036893 GO:0003677|GO:0005634
Pste4g02941 386 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 358 IPR044817 GO:0003677
Pste4g02941 386 MobiDBLite consensus disorder prediction 21 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02941 Pste-Chr4 20833625 20838475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02941 46 385 SBP-box Gene Family AT2G42200 42.077 1.47e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste4g02941 SBP 5.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02941 4 20833625 20838475 Pste4g02941 4 20833625 20838475 ECH
Pste5g00490 5 3186379 3190639 Pste4g02941 4 20833625 20838475 PCT