Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02934 ACTTTGTCGCAACTTGCAAGTGAAAGAGTGTGCGTTCTCCGGGAGTTTTACTCAGCAACATCTATTGTACGCTGTCCTCAAACTGCTGTTGACAAAGCACCAATCTTAACCACAGCACTCTTAGAAGAAAATGAAGAAAATCAAGACTATGTTCCCAGGTCAAAGCCTGCAGAGGAAGCTGGTGGCTGCAACATGGACTTCGATCTGGACTTGGAAACTTCATGGCCTTTGGATCACATGTCCTTTGTCTCCAACCCTTTTCTCTTCTCTTCCACCTCTGACCAACCTTACTCTCCTCTCTGGGCTTTCTCTGATGGGGAAGACCCCAAGCTTCCCTCTTCTGCTTTCTCTGATTGCCACAGGATCTTCTCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGAGGACAACAAAAAACTTTTGCCACCAGTTGTGCCAATGCCACCAGTGGAAGATTTGGATGGTTATTGTGTAATCAAGGAAAGGATGACACAAGCGCTTCGTTACTTCAAAGAGTTGACTGACTTGAATCTTTTGGTTCAAGTTTGGGCACCTGTGCGAAATGGTCAGCCTTTTGTTCTTGATCCGCATAGTAATGGACTTCATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCTGTGGATGGGGAGAATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAAAAATTACCGGAATGGACTCCCAATGTTCTCTATTATTCTAGTAAAGAGTATCCTCGCCGAGATCATGCTGAACATTACAATGTCCGTGGAACCTTGGCTTTGCCCGTGTTTGAACCTTCAATGCAGTCATGTGTTGGTGTATTGGAGTTGATAATGACTTCACTGAAGATTAACTACGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTAAGGTTGGATTTCTTTTAACTTTGCTAATTATATCCATGTTTAATGGTTTGTTCATGTTTGGTAAATTTCACATGATGATTGTAATTTATAGCATATCAAGATTGCTTTTCACAAAATTCATCAATCACCTACTGTCAGTTTCCTTGCAGACGGTAAATTTGAGAAGTTCGGAAATTTTGGACCATCCATACACTAAGATTTGTAATGAAGGCCGTCAGAATGCATTATCCGAGATCTTGGAGATTTTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCTCAGACATGGATTCCCTGTAAGCATCGGAGTGTTTTGGCCCAAGGTGGTGGTCTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATTATAGATGCTCATTTATGGGGTTTTCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGTAGGGCATTTTTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAATTCTACAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAGTATGTTTACGAAGCTCTCATACAGGAAATGATGATTATGTGTTAGAGTTTTTTCTGCCTCCTAGAATAGCAGAATTTCATGAACAAAGGACTTTGTTGGGATCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCCTCTGGTATTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAAAGTTCATACAAGGCATGAATCTATTCCACTTTCCCCTGCTATTAAGTCTCCAACTAGACCTGATACCTCACCAAATATGGGGGAGGAAGTGCCACAGGATCCATCAGAACAACAAATATTGATGTACAGTAATGACATTATTGATGGAGGGAGTCTTCGTGATAATGCCAGTGGAAACATGGATCAGATGCCCTCCTTAGAGACTAAAAACATAAAAAAGCCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGCCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCAACAACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCCCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATAGAATCTGTCCAAGGTGCTGAAGGAGCCTTTGGTTTGAATTCTCTCAGCAAAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCAGAGCCTTCTACTCCAAACAAGCACGGCCAGCCTGCCTCATTAAGTATTAGGCCATCAGAGCCTCAGACGAAAGAGAATGAATTGAATGTCCCCGAAACATTAGAAACAAACAGACAGTCAGGAATGGAAGATCAATTTCTAGCAGGAAAGACACAGAATCTTGAGAAAGTAATTAATGGTAAAGGTGGGTCCACTCGGGAGTTTGGGAAAGAACCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGATTCATACCATGACAGTCCCCCTGATGAAAGTTCTCCTCTAAAGGATATATTCATTACTTCCAACAATGATCAGTGTGCTGTGCTAAAGAGATCACCAGAATCAACACTGCAGCCAACTACCAATACACCAAACCAGCCAACTGCTTACCCTATGCTTGATTTTGCTGCCGCAGAACTTCAAGAGCCATTTGGAGGCATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTGAGAAATTTGTGTCCTTCTGTAGCCGAGGTCATTTTGGAGGAAATGGTTCCAGAAGCTTGTGGAACTAATCTTCCAGGTCCAGATTTGTCTCCAAAGCAAAGCATGGATACTCCTAACAAAGCAGTGACACCTTTTGCAGCTAGGAAAGAGACGAAGACTGTGACTATCAAGGCAACATACAGAGAAGATATCTTAAGATTCCGGGTCTCTTTGACCTGTGGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGACCACGAATGGGTTTTGATCGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCTGGAAGCAACATAATCAGGGTTTTGGTGCATGAAATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGAGAAGTGACTGTATATAGGGTGAGTTTGTACTCTAATTATGTAGGTTCTTGTGTCATTTAGAACAATAGGGAAAGAAAACAGATTTTGGTTATTATCTGCTCAAATTGTAAGAAACGTGAGAAGTTGAGATCAGATAAAAGGAGTTTGAATCTTTGATATCACTCAAAATCAAGTTACTGGTTATTCATCATGAGGGAAAGCGAGGATTTTTTGGTGGCACATAATGTGGTCAACTTTTAAAATAGAACATGTTGACAGTCAAATTTATTAACTGTTTGGTTCATATATTGGATGTAGGGAAACTTAATTTTTGTTGAAAAAAGTATGATTATGATCTTTGGTTAAGTGCAT 3549 0.4145 TLSQLASERVCVLREFYSATSIVRCPQTAVDKAPILTTALLEENEENQDYVPRSKPAEEAGGCNMDFDLDLETSWPLDHMSFVSNPFLFSSTSDQPYSPLWAFSDGEDPKLPSSAFSDCHRIFSCDSNSIAEKPVENEDNKKLLPPVVPMPPVEDLDGYCVIKERMTQALRYFKELTDLNLLVQVWAPVRNGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAEHYNVRGTLALPVFEPSMQSCVGVLELIMTSLKINYAPEVDKICKALKVGFLLTLLIISMFNGLFMFGKFHMMIVIYSISRLLFTKFINHLLSVSLQTVNLRSSEILDHPYTKICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHSMCFCSNITQFYKTDYPLVHYALMFGLTSCFAVCLRSSHTGNDDYVLEFFLPPRIAEFHEQRTLLGSILATMKQHFQSLKIASGIELEDGSIEIIEATIEKVHTRHESIPLSPAIKSPTRPDTSPNMGEEVPQDPSEQQILMYSNDIIDGGSLRDNASGNMDQMPSLETKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSKSPLPIAVGSFPEPSTPNKHGQPASLSIRPSEPQTKENELNVPETLETNRQSGMEDQFLAGKTQNLEKVINGKGGSTREFGKEPKRTRTGSGSSEDSTNPTSHDSYHDSPPDESSPLKDIFITSNNDQCAVLKRSPESTLQPTTNTPNQPTAYPMLDFAAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEVILEEMVPEACGTNLPGPDLSPKQSMDTPNKAVTPFAARKETKTVTIKATYREDILRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHEITSNLGSSCESSGE 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02934 1065 MobiDBLite consensus disorder prediction 751 776 - -
Pste4g02934 1065 MobiDBLite consensus disorder prediction 592 608 - -
Pste4g02934 1065 CDD PB1_NLP 971 1051 IPR034891 -
Pste4g02934 1065 FunFam RWP-RK domain-containing protein 967 1051 - -
Pste4g02934 1065 Pfam RWP-RK domain 661 709 IPR003035 -
Pste4g02934 1065 MobiDBLite consensus disorder prediction 869 888 - -
Pste4g02934 1065 Gene3D - 966 1051 - -
Pste4g02934 1065 Pfam PB1 domain 970 1051 IPR000270 GO:0005515
Pste4g02934 1065 MobiDBLite consensus disorder prediction 793 855 - -
Pste4g02934 1065 PANTHER PROTEIN NLP8 94 1064 IPR045012 GO:0003700
Pste4g02934 1065 SUPERFAMILY CAD & PB1 domains 967 1055 - -
Pste4g02934 1065 MobiDBLite consensus disorder prediction 827 841 - -
Pste4g02934 1065 ProSiteProfiles PB1 domain profile. 970 1052 IPR000270 GO:0005515
Pste4g02934 1065 ProSiteProfiles RWP-RK domain profile. 648 729 IPR003035 -
Pste4g02934 1065 MobiDBLite consensus disorder prediction 743 776 - -
Pste4g02934 1065 SMART PB1_new 970 1052 IPR000270 GO:0005515
Pste4g02934 1065 MobiDBLite consensus disorder prediction 586 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02934 Pste-Chr4 20722727 20727508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02934 208 741 NLP Transcription Factor Family AT1G64530 60.149 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pste4g02934 PB1 4e-19 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01170 9 9332738 9337434 Pste4g02934 4 20722727 20727508 PCT