Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02922 ATTTGCTCGTGCTTAGCAAAAGACTGGGACCTGACCCAGAAATGGTTCCGAAGCAAATCCGCATCGTGGATTTCAAGTTCGGGCGTGGGAAATATCCGCACAACTCTCTCCTTCACCGCATCGCTTTCCTTCTCACGGCTTCTTCTTCTCTTCTTTTCCTAAAACCCTCACCGCCCCTCCGCCGCGCCTCCTCTAAGCCTTCGTCGCGCCTCCTCCGAGCTCCGCCGCGCACCTCCTACTTACCTGGTCTTAATGTTGGTGTGGAGACTCATGTGTATTCTGGTGACAGTGAAACAATGAGGAAGCTAAAGTTTCATGAAAAAAAGCTTTTGAAGAAGGTGAATTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTTGTTATGCAACGCTATCATATTACTGGACGAGACGATTACAAAAAATATTCAGGTTTATGTCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGACCCTTTTCGTATTGATATGACTGATAAGCTTTTGGAAAAACTATACAACATGGGTGTGATTCCAACCAGGCAAACCATTACCCTATGTGAACGCTTAACTGTGTCATCCTTCTGTAGGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACATACATTGAGCAAGGGCATGTACGAGTTGGTCCAGAGACAGTTACGGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATGGGTGGATTCATCCAAGATAAAGAGAAAGGTGCTTCAGTACAATGGCAAATTGGATGACTATGATTTAATGAATTAAGTGGAAAACTAGATGTTAATTATTGTGGTTTAGTATTTATATAAATCATGGACGGGTTTGTTTTCAATGCCCTTAATTTAGCAGGCTTGAATTTAATGTATTATTTTTAATTTTAAGTTCATACCAGATTAAGGTTATGATGTAATGATCCAGAATTTAGTGAAAGATAGTGATTTTCAATGTTTAAATTATTTTCTGCATTTTTTCAATCAGCTGGCTGATTAGGGGTCACAGCTGCCTCAGCTTGGATTTTAAGTGAATGATGAGCCATTGTGTTTGATTGTTGATGGGACAG 1140 0.4123 MVPKQIRIVDFKFGRGKYPHNSLLHRIAFLLTASSSLLFLKPSPPLRRASSKPSSRLLRAPPRTSYLPGLNVGVETHVYSGDSETMRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYSGLCHMVQKLVNILKQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQTITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLQYNGKLDDYDLMN 267
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02922 267 Pfam S4 domain 192 238 IPR002942 GO:0003723
Pste4g02922 267 Pfam Ribosomal protein S4/S9 N-terminal domain 88 190 IPR001912 GO:0019843
Pste4g02922 267 CDD S4 192 253 - -
Pste4g02922 267 FunFam U3 small nucleolar ribonucleoprotein IMP3 192 264 - -
Pste4g02922 267 SUPERFAMILY Alpha-L RNA-binding motif 111 258 - -
Pste4g02922 267 SMART s4_6 192 259 IPR002942 GO:0003723
Pste4g02922 267 PANTHER 30S 40S RIBOSOMAL PROTEIN 90 263 IPR022801 GO:0003735|GO:0015935|GO:0019843
Pste4g02922 267 Gene3D - 192 265 IPR036986 GO:0003723
Pste4g02922 267 ProSiteProfiles S4 RNA-binding domain profile. 192 258 - -
Pste4g02922 267 SMART Ribosomal_S4_2 88 191 IPR001912 GO:0019843
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste4g02922 Pste-Chr4 20588007 20594088 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02922 148 233 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 9.63e-09 52.4